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Cheap flights from the Philippines to Kota Kinabalu from ₱3,047

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 11/21. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Nov 29 — Dec 61
1 adult
1 adult, Economy, 0 bags

Find flight deals from Philippines to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Philippines to Kota Kinabalu
Explore the most affordable flight options available from Philippines to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on October 30, 2025.

Wed 11/124:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/27₱5,859
Fri 11/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/236:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/28₱5,977
Wed 11/194:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/236:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/28₱6,387
Wed 11/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/28₱6,563
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/96:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/28₱6,797
Fri 11/284:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/27₱6,914
Sun 12/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 1/46:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/28₱7,148
Sun 11/304:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Fri 12/126:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 10/28₱8,613
Sun 11/231:20 amCEB - BKI
1 stop17h 10mMultiple Airlines
Fri 12/57:05 amBKI - CEB
2 stops29h 00mMultiple Airlines
Deal found 10/28₱9,727
Sun 11/231:20 amCEB - BKI
1 stop17h 10mMultiple Airlines
Wed 12/311:25 pmBKI - CEB
1 stop12h 40mMultiple Airlines
Deal found 10/28₱9,844
Wed 11/266:35 amCEB - BKI
1 stop11h 55mMultiple Airlines
Thu 12/41:05 pmBKI - CEB
1 stop8h 20mMultiple Airlines
Deal found 10/28₱10,254
Wed 11/2610:35 amCEB - BKI
1 stop7h 55mMultiple Airlines
Tue 12/211:25 pmBKI - CEB
1 stop12h 40mMultiple Airlines
Deal found 10/28₱10,371

Cheap flight deals from Philippines to Kota Kinabalu

Keep the following information in mind while searching for Philippines to Kota Kinabalu flight deals. Data was last updated October 30, 2025.

Round-trip from

₱5,859

One-way from

₱3,047

Popular in

January

Cheapest in

July

Average price

₱6,504

Good round-trip deal

₱6,442 or less

Good one-way deal

₱3,418 or less
Philippines AirAsia
  • Philippines AirAsia
  • 11/12-11/16
  • Nonstop
  • 4h 15m total
  • Philippines to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 11/17
  • Nonstop
  • 2h 15m total
  • Philippines to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 16% potential increase in price (₱74,084 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (₱7,480 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in October 2025
Search Deals
Price to beat on a round-trip flight from Philippines to Kota Kinabalu.
Search Deals
Price to beat on a one-way flight from Philippines to Kota Kinabalu.
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Cheapflights Fare Finder

 
Customize your flight search to find flights from Philippines to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated October 30, 2025.
Use the filters below to find and compare flights from the Philippines to Kota Kinabalu that are best for you.

Fly from

Philippines

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 1/25

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,387

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/19

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/23

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,445

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 1/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,563

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/26

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,563

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 11/30

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Mon 12/1

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,914

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 11/28

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,914

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 11/30

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 12/12

6:55 pm-8:55 pm

Nonstop2h 00m

₱8,613

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 11/23

1:20 am-6:30 pm

1 stop17h 10m

Kota Kinabalu

Thu 12/4

6:00 am-12:05 pm

2 stops30h 05m

₱9,727

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 2/8

6:35 am-6:30 pm

1 stop11h 55m

Kota Kinabalu

Sun 2/15

6:55 pm-1:50 am

1 stop6h 55m

₱10,020

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/12

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/16

8:30 am-2:05 pm

1 stop5h 35m

₱10,547

Flights are sorted by cheapest round-trip flights first.

Deals found on 10/28

Showing 1-10 of 31 results
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Best time to book a flight from Philippines to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Philippines with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from the Philippines to Kota Kinabalu

What is the cheapest month to book a flight from Philippines to Kota Kinabalu?

Currently, September is the cheapest month in which you can book a flight from Philippines to Kota Kinabalu (average of ₱4,043). Flying from Philippines to Kota Kinabalu in March is currently the most expensive (average of ₱5,508). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from PH to BKI?

Find hourly flight availability from Philippines to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated October 30, 2025.

It’s optimal to fly from Philippines to Kota Kinabalu in the afternoon. By choosing this option you can save up to 20% on the cost of your flight, compared to a flight in the evening.

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated October 30, 2025.
Get a feel of what it's like to fly with Malaysia Airlines, Scoot, and Philippines AirAsia from the Philippines to Kota Kinabalu by reading reviews from past customers. Users have also rated airlines in terms of entertainment options, comfort, food, crew/service, and boarding process.
Malaysia Airlines
7.3
Good
278 reviews
Check prices

Entertainment

6.7

Food

7.0

Crew

8.1

Overall

7.3

Comfort

7.4

Boarding

7.6

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Malaysia Airlines
7.3
Good
278 reviews
Malaysia Airlines
7.3
Good
278 reviews
Check prices

Entertainment

6.7

Food

7.0

Crew

8.1

Overall

7.3

Comfort

7.4

Boarding

7.6

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Scoot
6.7
Okay
309 reviews
Malaysia Airlines
7.3
Good
278 reviews
Check prices

Entertainment

6.7

Food

7.0

Crew

8.1

Overall

7.3

Comfort

7.4

Boarding

7.6

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Philippines AirAsia
6.6
Okay
114 reviews
Malaysia Airlines
7.3
Good
278 reviews
Check prices

Entertainment

6.7

Food

7.0

Crew

8.1

Overall

7.3

Comfort

7.4

Boarding

7.6

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

Related info for your journey

Find useful and relevant information for your journey from Philippines to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Philippines?

    Kota Kinabalu (BKI) is the airport you will fly into if you book a flight from Philippines to Kota Kinabalu. It is only a 5.8 km journey from Kota Kinabalu (BKI) to Kota Kinabalu’s city center.

  • How popular is this Philippines to Kota Kinabalu flight route?

    The Philippines to Kota Kinabalu flight path was viewed by 1,329 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Philippines to Kota Kinabalu?

    There are many flights that can get you from Philippines to Kota Kinabalu in 2h 15m. Fly via Philippines AirAsia to get the fastest option. The distance between Philippines and Kota Kinabalu is about 1096 km. Generally, flights for this route are direct.

  • What are the most popular routes from Philippines to Kota Kinabalu?

    The most popular flight routes from Philippines to Kota Kinabalu are Manila Ninoy Aquino Intl - Kota Kinabalu, Cebu City Mactan Intl - Kota Kinabalu and Davao City Francisco Bangoy - Kota Kinabalu.

  • What are the cheapest flights from Philippines to Kota Kinabalu?

    On average you can expect to pay ₱5,189 for a flight from Philippines to Kota Kinabalu. The cheapest flight overall is ₱3,094 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at ₱5,977.

  • Can I find deals for flights from Philippines to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Philippines to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Philippines to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Philippines to Kota Kinabalu.

  • Can I find deals for business class flights from Philippines to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Philippines to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Philippines to Kota Kinabalu?

    Currently, September is the cheapest month in which you can book a flight from Philippines to Kota Kinabalu (average of ₱4,043). Flying from Philippines to Kota Kinabalu in March is currently the most expensive (average of ₱5,508). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Philippines to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top 3 airlines flying from Philippines to Kota Kinabalu

Discover the top 3 airlines that operate flights from Philippines to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated October 30, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱4,396Average₱9,335FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
ScootCheapest₱8,522Average₱10,802FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
Malaysia AirlinesCheapest₱18,358Average₱24,400FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Philippines to Kota Kinabalu?

Deals for Philippines to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.

Why should you use Cheapflights to find cheap flight tickets from Philippines to Kota Kinabalu?

Cheapflights taps into our reliable network of hundreds of airlines and travel agencies to find the best deals for flights from Philippines to Kota Kinabalu for you. Better yet — we are completely free to use.

Can Cheapflights find flights from Philippines to Kota Kinabalu with no change fees?

Yes! Cheapflights helps users easily find flights from Philippines to Kota Kinabalu with no change fees.

Can Cheapflights notify me if prices for flights from Philippines to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Philippines to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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