Find flights
Deals
When to book
Airlines
FAQs

Cheap flights from Manila to Kota Kinabalu from ₱2,944

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/26. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Dec 7 — Dec 141
1 adult
1 adult, Economy, 0 bags

Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in July or August, booked 71 days in advance, depart on a Tuesday or Thursday and return on a Thursday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated November 7, 2025.

Round-trip from

₱6,065

One-way from

₱2,944

Popular in

January

Cheapest in

July

Average price

₱6,359

Good round-trip deal

₱6,423 or less

Good one-way deal

₱3,439 or less
Philippines AirAsia
  • Philippines AirAsia
  • 11/26-11/30
  • Nonstop
  • 4h 15m total
  • Manila to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 1/26
  • Nonstop
  • 2h 15m total
  • Manila to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 16% potential increase in price (₱75,336 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (₱7,569 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in November 2025
Search Deals
Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals
Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals

Find flight deals from Manila to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 7, 2025.

Wed 11/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/4₱6,065
Sun 12/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 12/286:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/5₱7,301
Mon 12/224:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 12/296:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/7₱7,419
Fri 12/54:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Fri 12/126:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/5₱8,008
Fri 11/74:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/96:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/5₱8,538
Fri 11/74:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/126:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/6₱9,833
Fri 12/54:15 pmMNL - BKI
Nonstop2h 15mMultiple Airlines
Thu 12/111:30 amBKI - MNL
1 stop23h 50mMultiple Airlines
Deal found 11/5₱10,834
Sun 11/164:15 pmMNL - BKI
Nonstop2h 15mMultiple Airlines
Sat 11/221:30 pmBKI - MNL
1 stop11h 05mMultiple Airlines
Deal found 11/6₱11,011
Tue 11/257:30 pmMNL - BKI
1 stop23h 30mMultiple Airlines
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/7₱11,658
Sat 12/612:55 pmMNL - BKI
1 stop10h 05mMultiple Airlines
Wed 12/106:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/5₱11,717

Cheapflights Fare Finder

 
Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated November 7, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Manila

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/26

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,065

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 1/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,183

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 12/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 12/28

6:55 pm-8:55 pm

Nonstop2h 00m

₱7,301

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 12/22

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Mon 12/29

6:55 pm-8:55 pm

Nonstop2h 00m

₱7,419

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 12/5

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 12/12

11:25 pm-8:40 pm

2 stops21h 15m

₱11,246

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 11/16

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sat 11/22

10:35 am-11:55 pm

2 stops13h 20m

₱11,953

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

7:30 pm-11:05 am

1 stop15h 35m

Kota Kinabalu

Fri 1/30

8:00 pm-6:30 pm

1 stop22h 30m

₱13,660

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 1/26

4:15 pm-6:30 pm

Nonstop2h 15m

₱2,944

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 11/28

4:15 pm-6:30 pm

Nonstop2h 15m

₱3,003

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 11/21

4:15 pm-6:30 pm

Nonstop2h 15m

₱3,003

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/7

Showing 1-10 of 19 results
1
2

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on October 31, 2025.

The price you pay for your flight from Manila to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 71 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

What is the cheapest month to book a flight from Manila to Kota Kinabalu?

Currently, September is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱4,063). Flying from Manila to Kota Kinabalu in March is currently the most expensive (average of ₱5,535). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated November 7, 2025.

It’s typically best to fly out from Manila to Kota Kinabalu in the evening. Doing so could potentially save you 52% on the flight price compared to flying at noon, which is usually more expensive.

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated November 7, 2025.
Read reviews from past customers who have flown Scoot and Philippines AirAsia from Manila to Kota Kinabalu. Users can see the overall rating for each airline as well as how each is rated in terms of entertainment options, comfort, food, crew/service, and boarding process.
Scoot
6.7
Okay
309 reviews
Check prices

Entertainment

5.2

Comfort

6.6

Crew

7.4

Food

5.7

Boarding

6.8

Overall

6.7

Reviews

1 / 17
10.0
Excellent

Gary,Oct 2025

CEB - SIN

We didn’t have food or entertainment but the flight was very good .will fly with them again.
Scoot
6.7
Okay
309 reviews
Scoot
6.7
Okay
309 reviews
Check prices

Entertainment

5.2

Comfort

6.6

Crew

7.4

Food

5.7

Boarding

6.8

Overall

6.7

Reviews

1 / 17
10.0
Excellent

Gary,Oct 2025

CEB - SIN

We didn’t have food or entertainment but the flight was very good .will fly with them again.
Philippines AirAsia
6.6
Okay
114 reviews
Scoot
6.7
Okay
309 reviews
Check prices

Entertainment

5.2

Comfort

6.6

Crew

7.4

Food

5.7

Boarding

6.8

Overall

6.7

Reviews

1 / 17
10.0
Excellent

Gary,Oct 2025

CEB - SIN

We didn’t have food or entertainment but the flight was very good .will fly with them again.

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 1,301 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Manila to Kota Kinabalu?

    There are many flights that can get you from Manila to Kota Kinabalu in 2h 15m. Fly via Philippines AirAsia to get the fastest option. The distance between Manila and Kota Kinabalu is about 1096 km. Generally, flights for this route are direct.

  • What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?

    Flying on Philippines AirAsia is currently your cheapest option to Kota Kinabalu, with prices starting at ₱4,411. Another option worth looking into is Scoot, starting at ₱8,564 round trip. You may be able to fly from Manila to Kota Kinabalu for 32% less than the average price by searching for these airlines.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay ₱5,127 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is ₱3,109 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at ₱5,888.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Kota Kinabalu?

    Currently, September is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱4,063). Flying from Manila to Kota Kinabalu in March is currently the most expensive (average of ₱5,535). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Fly from Manila to Kota Kinabalu on these airlines

Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on November 7, 2025.
Philippines AirAsia flights from Manila Ninoy Aquino Intl to Kota Kinabalu
Scoot flights from Manila Ninoy Aquino Intl to Kota Kinabalu

Top 2 airlines flying from Manila to Kota Kinabalu

Discover the top 2 airlines that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated November 7, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱4,411Average₱6,509FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
ScootCheapest₱8,564Average₱10,855FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Manila to Kota Kinabalu?

Cheapflights makes it easy to find Manila to Kota Kinabalu flights by helping our users search from 900+ travel sites for deals. We also provide you with filters for cabin, price, airline, airports, number of stops, and many more to narrow down that perfect flight.

Why should you use Cheapflights to find cheap flight tickets from Manila to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Manila.

Can Cheapflights find flights from Manila to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Manila? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Manila to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Manila to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.