Find flights
Deals
When to book
Airlines
FAQs

Cheap flights from Manila to Kota Kinabalu from ₱3,453

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/19. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Jan 21 — Jan 281
1 adult

The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in November or July, booked 78 days in advance, depart on a Friday or Wednesday and return on a Wednesday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated January 16, 2025.

Round-trip from

₱6,788

One-way from

₱3,453

Popular in

December

Cheapest in

November

Average price

₱7,666
Philippines AirAsia
  • Philippines AirAsia
  • 2/21-2/26
  • Nonstop
  • 4h 15m total
  • Manila to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 4/19
  • Nonstop
  • 2h 10m total
  • Manila to Kota Kinabalu
Search Deals
High demand for flights, 2% potential price rise
Search Deals
Best time to find cheap flights, 1% potential price drop
Search Deals
Average for round-trip flights in January 2025
Search Deals

Find flight deals from Manila to Kota Kinabalu

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on January 16, 2025.

Fri 2/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 2/266:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 1/15₱6,788
Sat 2/2212:55 pmMNL - BKI
1 stop9h 20mMultiple Airlines
Wed 2/266:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 1/15₱8,661
Sun 3/26:30 amMNL - BKI
1 stop12h 35mScoot
Fri 3/76:45 pmBKI - MNL
1 stop10h 45mScoot
Deal found 1/14₱9,305
Fri 2/281:10 amMNL - BKI
1 stop20h 15mAirAsia
Sat 3/81:30 pmBKI - MNL
1 stop22h 45mAirAsia
Deal found 1/15₱10,885
Fri 2/149:40 pmMNL - BKI
1 stop18h 30mRoyal Brunei Airlines
Sun 2/168:30 amBKI - MNL
1 stop5h 35mRoyal Brunei Airlines
Deal found 1/15₱15,508
Fri 2/215:40 pmMNL - BKI
1 stop24h 20mChina Southern
Wed 2/267:05 pmBKI - MNL
1 stop27h 25mChina Southern
Deal found 1/15₱16,678
Fri 1/316:40 amMNL - BKI
1 stop20h 30mMalaysia Airlines
Mon 2/34:00 amBKI - MNL
1 stop12h 30mMalaysia Airlines
Deal found 1/15₱23,408
Sat 3/14:55 amMNL - BKI
1 stop19h 35mChina Eastern
Thu 3/61:30 amBKI - MNL
1 stop26h 10mChina Eastern
Deal found 1/14₱27,914
Sat 1/259:25 pmMNL - BKI
1 stop28h 15mPhilippine Airlines
Tue 1/289:50 amBKI - MNL
1 stop9h 45mPhilippine Airlines
Deal found 1/15₱28,441
Wed 1/1511:20 pmMNL - BKI
1 stop25h 10mJeju Air
Tue 1/211:30 amBKI - MNL
1 stop20h 50mJeju Air
Deal found 1/15₱32,011
Fri 1/312:05 pmMNL - BKI
2 stops10h 50mSingapore Airlines
Mon 2/34:00 amBKI - MNL
2 stops13h 45mSingapore Airlines
Deal found 1/15₱40,613

Find flights from Manila to Kota Kinabalu within your budget

Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated January 16, 2025.

Fly from

Any airport

Fly to

Any airport

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 2/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Wed 2/26

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,788

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 2/22

12:55 pm-10:15 pm

1 stop9h 20m

Kota Kinabalu

Wed 2/26

6:55 pm-8:55 pm

Nonstop2h 00m

₱8,661

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 3/2

6:30 am-7:05 pm

1 stop12h 35m

Kota Kinabalu

Fri 3/7

6:45 pm-5:30 am

1 stop10h 45m

₱9,305

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 2/28

1:10 am-9:25 pm

1 stop20h 15m

Kota Kinabalu

Sat 3/8

1:30 pm-12:15 pm

1 stop22h 45m

₱10,885

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 2/14

9:40 pm-4:10 pm

1 stop18h 30m

Kota Kinabalu

Sun 2/16

8:30 am-2:05 pm

1 stop5h 35m

₱15,508

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 2/21

5:40 pm-6:00 pm

1 stop24h 20m

Kota Kinabalu

Wed 2/26

7:05 pm-10:30 pm

1 stop27h 25m

₱16,678

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 3/1

11:20 pm-12:30 am

1 stop25h 10m

Kota Kinabalu

Fri 3/7

1:30 am-10:20 pm

1 stop20h 50m

₱20,131

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 1/31

6:40 am-3:10 am

1 stop20h 30m

Kota Kinabalu

Mon 2/3

4:00 am-4:30 pm

1 stop12h 30m

₱23,408

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 3/1

4:55 am-12:30 am

1 stop19h 35m

Kota Kinabalu

Thu 3/6

1:30 am-3:40 am

1 stop26h 10m

₱27,914

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 1/25

9:25 pm-1:40 am

1 stop28h 15m

Kota Kinabalu

Tue 1/28

9:50 am-7:35 pm

1 stop9h 45m

₱28,441

Flights are sorted by cheapest round-trip flights first.

Deals found on 1/15

Showing 1-10 of 18 results
1
2

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Travel insights for flights from Manila to Kota Kinabalu

Get recent, data-driven insights about flights from Manila to Kota Kinabalu including ideal travel times, pricing trends, and more.

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on January 10, 2025.

The price you pay for your flight from Manila to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 78 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

What is the cheapest month to book a flight from Manila to Kota Kinabalu?

Currently, January is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱83). Flying from Manila to Kota Kinabalu in October is currently the most expensive (average of ₱119). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated January 16, 2025.

It’s typically best to fly out from Manila to Kota Kinabalu in the afternoon. Doing so could potentially save you 48% on the flight price compared to flying at noon, which is usually more expensive.

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated January 16, 2025.
Singapore Airlines
8.1
Very good
1,327 reviews
Check prices

Comfort

7.9

Entertainment

8.0

Boarding

8.2

Crew

8.6

Food

7.7

Overall

8.1

Reviews

1 / 10

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.

Singapore Airlines
8.1
Very good
1,327 reviews
Singapore Airlines
8.1
Very good
1,327 reviews
Check prices

Comfort

7.9

Entertainment

8.0

Boarding

8.2

Crew

8.6

Food

7.7

Overall

8.1

Reviews

1 / 10

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.

China Southern
7.4
Good
85 reviews
Singapore Airlines
8.1
Very good
1,327 reviews
Check prices

Comfort

7.9

Entertainment

8.0

Boarding

8.2

Crew

8.6

Food

7.7

Overall

8.1

Reviews

1 / 10

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.

Philippine Airlines
7.3
Good
922 reviews
Singapore Airlines
8.1
Very good
1,327 reviews
Check prices

Comfort

7.9

Entertainment

8.0

Boarding

8.2

Crew

8.6

Food

7.7

Overall

8.1

Reviews

1 / 10

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.

Malaysia Airlines
7.3
Good
277 reviews
Singapore Airlines
8.1
Very good
1,327 reviews
Check prices

Comfort

7.9

Entertainment

8.0

Boarding

8.2

Crew

8.6

Food

7.7

Overall

8.1

Reviews

1 / 10

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 1,070 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?

    Flying on Philippines AirAsia is currently your cheapest option to Kota Kinabalu, with prices starting at ₱6,788. Additional round-trip tickets that might be worth considering are offered by Scoot and AirAsia, with the lowest prices starting at ₱9,305 and ₱10,885, respectively. You may be able to fly from Manila to Kota Kinabalu for 1% less than the average price by searching for these airlines.

  • What are the cheapest airlines to fly from Manila to Kota Kinabalu one-way?

    ₱3,453 is the cheapest one-way deal found within the past few days, from Philippines AirAsia. You may also be able to find cheap deals on AirAsia and Scoot, with prices starting from ₱5,442 and ₱5,911, respectively.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay ₱6,392 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is ₱2,543 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at ₱6,788.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Kota Kinabalu?

    Currently, January is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱83). Flying from Manila to Kota Kinabalu in October is currently the most expensive (average of ₱119). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Fly from Manila to Kota Kinabalu on these airlines

Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on January 16, 2025.
Philippines AirAsia flights from Manila Ninoy Aquino Intl to Kota Kinabalu
Cebu Pacific flights from Manila Ninoy Aquino Intl to Kota Kinabalu
Scoot flights from Manila Ninoy Aquino Intl to Kota Kinabalu