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₱2,946+ Cheap flights to Kota Kinabalu

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 3/30. Fares are subject to change and may not be available on all flights or dates of travel.
— BKI
Dec 14 — Dec 211
1 adult
1 adult, Economy, 0 bags

Flights to Kota Kinabalu in 2025

Find the latest flights to Kota Kinabalu in 2025, with up-to-date prices and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on November 14, 2025.

Round-trip from

₱5,891

One-way from

₱2,946

Popular in

December

Cheapest in

July

Average price

₱6,716

Good round-trip deal

₱6,426 or less

Good one-way deal

₱3,441 or less
Philippines AirAsia
  • Philippines AirAsia
  • 2/6-2/8
  • Nonstop
  • 4h 15m total
  • Manila to Kota Kinabalu
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Philippines AirAsia
  • Philippines AirAsia
  • 1/26
  • Nonstop
  • 2h 15m total
  • Manila to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 13% potential increase in price (₱1,011 potential increase over avg. RT price).
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Cheapest flight prices on average. 2% potential price decrease (₱140 potential savings vs. average RT price).
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Average for round-trip flights in November 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights to Kota Kinabalu
Explore the most affordable flight options available to Kota Kinabalu. Find the lowest fares based on data from user searches, with prices last updated on November 14, 2025.

Wed 11/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/13₱6,304
Fri 12/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 12/316:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/12₱7,836
Sun 12/284:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 1/46:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/13₱8,366
Wed 12/104:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 12/176:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/11₱8,601
Mon 12/294:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 1/56:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/14₱8,778
Fri 11/216:50 amMNL - BKI
1 stop10h 25mMultiple Airlines
Sun 11/236:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/12₱11,547
Wed 12/104:15 pmMNL - BKI
Nonstop2h 15mMultiple Airlines
Wed 12/171:05 pmBKI - MNL
2 stops12h 05mMultiple Airlines
Deal found 11/11₱11,842
Wed 11/262:05 amMNL - BKI
1 stop22h 25mMultiple Airlines
Fri 11/286:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/13₱11,901
Sun 11/164:15 pmMNL - BKI
Nonstop2h 15mMultiple Airlines
Sat 11/221:05 pmBKI - MNL
1 stop11h 30mMultiple Airlines
Deal found 11/14₱12,018
Fri 11/288:35 pmMNL - BKI
1 stop27h 55mMultiple Airlines
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/12₱12,372

Cheapflights Fare Finder

 
Locate flights to Kota Kinabalu that fit your budget, with regularly updated fares and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on November 14, 2025.
Use the filters below to find and compare flights to Kota Kinabalu that are best for you.

Fly from

Manila

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 3/30

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Thu 4/2

1:45 am-3:55 am

Nonstop2h 10m

₱6,009

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 11/28

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,304

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/26

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,304

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 1/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,775

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 12/28

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 1/4

6:55 pm-8:55 pm

Nonstop2h 00m

₱9,367

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 1/5

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 1/9

11:25 pm-12:15 pm

1 stop12h 50m

₱11,901

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 11/28

8:35 pm-12:30 am

1 stop27h 55m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱12,372

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

7:30 pm-11:05 am

1 stop15h 35m

Kota Kinabalu

Sat 1/24

11:50 am-5:30 am

1 stop17h 40m

₱13,314

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 3/30

11:10 pm-1:20 am

Nonstop2h 10m

₱2,946

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 3/25

4:15 pm-6:30 pm

Nonstop2h 15m

₱2,946

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/13

Showing 1-10 of 20 results
1
2

Best time to book a flight to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Kota Kinabalu

When is the best time to book a flight to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on November 7, 2025.

The price you pay for your flight to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 89 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated November 14, 2025.
See what other customers who have flown with Scoot and Philippines AirAsia to Malaysia have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Scoot
6.7
Okay
309 reviews
Check prices

Boarding

6.8

Food

5.7

Entertainment

5.2

Crew

7.4

Comfort

6.6

Overall

6.7

Reviews

1 / 17
10.0
Excellent

Gary,Oct 2025

CEB - SIN

We didn’t have food or entertainment but the flight was very good .will fly with them again.
Scoot
6.7
Okay
309 reviews
Scoot
6.7
Okay
309 reviews
Check prices

Boarding

6.8

Food

5.7

Entertainment

5.2

Crew

7.4

Comfort

6.6

Overall

6.7

Reviews

1 / 17
10.0
Excellent

Gary,Oct 2025

CEB - SIN

We didn’t have food or entertainment but the flight was very good .will fly with them again.
Philippines AirAsia
6.6
Okay
114 reviews
Scoot
6.7
Okay
309 reviews
Check prices

Boarding

6.8

Food

5.7

Entertainment

5.2

Crew

7.4

Comfort

6.6

Overall

6.7

Reviews

1 / 17
10.0
Excellent

Gary,Oct 2025

CEB - SIN

We didn’t have food or entertainment but the flight was very good .will fly with them again.

FAQs about flying to Kota Kinabalu

  • What airport do you fly into for flights to Kota Kinabalu?

    Kota Kinabalu (BKI), located 5.8 km from the city center, is the airport you fly into when you book flights to Kota Kinabalu.

  • Can I find cheaper flights to Kota Kinabalu if I am willing to have layovers?

    Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Kota Kinabalu on Cheapflights that require 1 or 2 stops for potential cost savings.

  • What is the best airline to fly to Kota Kinabalu?

    Based on reviews from Cheapflights users, Philippines AirAsia is rated the highest out of the airlines that fly to Kota Kinabalu.

  • What is the cheapest airport to fly to in Kota Kinabalu?

    Kota Kinabalu is currently the cheapest airport to fly to in Kota Kinabalu. One-way flights to Kota Kinabalu typically cost ₱897, while round-trip flights cost around ₱6,019.

  • How much is a round-trip flight to Kota Kinabalu?

    A round-trip flight to Kota Kinabalu will typically cost around ₱6,669, however they can be found for as little as ₱6,019.

  • Where does the fastest flight to Kota Kinabalu depart from?

    For those looking to save time traveling to Kota Kinabalu, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 10 minutes).

  • Does Kota Kinabalu have rental cars?

    Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

  • Are there hotels close to Kota Kinabalu?

    Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

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Can Cheapflights notify me if prices for flights to Kota Kinabalu become cheaper?

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