Cheap flights from Manila to Kota Kinabalu from ₱2,682
This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/26. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Sep 2 — Sep 91
Round-trip
1 adult
Economy
Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in July or June, booked 71 days in advance, depart on a Tuesday or Saturday and return on a Thursday
Cheap flight deals from Manila to Kota Kinabalu
Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated August 28, 2025.
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on August 28, 2025.
Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/27₱5,478
Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 10/111:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/26₱5,763
Wed 11/54:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,562
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,733
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,904
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/56:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/25₱6,961
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/196:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱7,018
Sat 10/1111:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Tue 10/141:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/27₱7,075
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 11/176:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱7,361
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 11/176:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱7,418
Sat 10/1111:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Fri 10/171:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/27₱8,502
Best flights from Manila to Kota Kinabalu
Discover carefully curated flight deals from Manila to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated August 28, 2025.
Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/27₱5,478
Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 10/111:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/26₱5,763
Wed 2/114:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 2/186:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,219
Wed 11/54:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,562
Fri 11/74:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,562
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,733
Fri 11/74:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/196:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,904
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/196:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,904
Wed 11/54:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/196:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,904
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,904
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Fri 11/216:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,961
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/56:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/25₱6,961
Direct flights from Manila to Kota Kinabalu
Explore non-stop flight options from Manila to Kota Kinabalu based on user searches, and compare prices and availability for your desired travel dates. Data last updated August 28, 2025.
Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/27₱5,478
Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 10/111:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/26₱5,763
Wed 2/114:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 2/186:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,219
Wed 11/54:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,562
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,733
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/166:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱6,904
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/56:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/25₱6,961
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/196:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱7,018
Sat 10/1111:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Tue 10/141:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/27₱7,075
Sun 11/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 11/176:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱7,361
Mon 11/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 11/176:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 8/26₱7,418
Last-minute flights from Manila to Kota Kinabalu
Discover last-minute flight deals from Manila to Kota Kinabalu. Data last updated August 28, 2025 and is based on user searches.
Fri 9/511:10 pmMNL - BKI
Nonstop2h 10mMultiple Airlines
Sun 9/710:55 pmBKI - MNL
1 stop13h 20mMultiple Airlines
Deal found 8/26₱12,382
One-way flights from Manila to Kota Kinabalu
Search for one-way flight options from Manila to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated August 28, 2025.
Mon 1/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Deal found 8/26₱2,682
Fri 1/94:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Deal found 8/27₱3,309
Fri 1/24:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Deal found 8/25₱3,880
Wed 9/2411:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Deal found 8/26₱4,108
Fri 12/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Deal found 8/27₱4,964
Sun 9/711:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Deal found 8/26₱5,078
Mon 1/266:30 amMNL - BKI
1 stop28h 35mScoot
Deal found 8/26₱5,306
Tue 9/1611:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Deal found 8/26₱5,421
Mon 1/261:10 amMNL - BKI
1 stop19h 00mMultiple Airlines
Deal found 8/26₱6,048
Tue 10/287:55 pmMNL - BKI
1 stop24h 15mMultiple Airlines
Deal found 8/26₱6,448
Mon 9/87:35 pmMNL - BKI
1 stop15h 40mScoot
Deal found 8/26₱6,562
Wed 9/246:55 amMNL - BKI
1 stop12h 30mScoot
Deal found 8/26₱6,619
Cheapflights Fare Finder
Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated August 28, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.
Fly from
Manila
Fly to
Kota Kinabalu
Route
Depart
Return
Price
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Fri 10/10
11:10 pm-1:20 am
Nonstop2h 10m
Kota Kinabalu
Sun 10/12
1:45 am-3:55 am
Nonstop2h 10m
₱5,478
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Fri 10/10
11:10 pm-1:20 am
Nonstop2h 10m
Kota Kinabalu
Sat 10/11
1:45 am-3:55 am
Nonstop2h 10m
₱5,763
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Wed 2/11
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Wed 2/18
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,219
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Wed 11/5
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Sun 11/16
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,562
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Fri 11/7
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Sun 11/16
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,562
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Sun 11/9
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Sun 11/16
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,733
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Fri 11/7
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Wed 11/19
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,904
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Sun 11/9
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Wed 11/19
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,904
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Wed 11/5
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Wed 11/19
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,904
ManilaKota Kinabalu
MNL - BKI
MNLBKI
Manila Ninoy Aquino Intl
Mon 11/3
4:15 pm-6:30 pm
Nonstop2h 15m
Kota Kinabalu
Sun 11/16
6:55 pm-8:55 pm
Nonstop2h 00m
₱6,904
Flights are sorted by cheapest round-trip flights first.
Deals found on 8/26
Showing 1-10 of 24 results
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Best time to book a flight from Manila to Kota Kinabalu
Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Cheapflights Insights
Everything you need to know about your flight from Manila to Kota Kinabalu
How far ahead should I book a flight from Manila to Kota Kinabalu?
Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on August 22, 2025.
The price you pay for your flight from Manila to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 71 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.
What is the cheapest month to book a flight from Manila to Kota Kinabalu?
Currently, January is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱83). Flying from Manila to Kota Kinabalu in September is currently the most expensive (average of ₱115). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
What is the cheapest time of day to fly from MNL to BKI?
Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated August 28, 2025.
It’s typically best to fly out from Manila to Kota Kinabalu in the evening. Doing so could potentially save you 52% on the flight price compared to flying at noon, which is usually more expensive.
Reviews of airlines servicing Kota Kinabalu
Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated August 28, 2025.
Read reviews from past customers who have flown Malaysia Airlines, Scoot, and Philippines AirAsia
from Manila to Kota Kinabalu. Users can see the overall rating for each airline as well as how each is rated in terms of entertainment options, comfort, food, crew/service, and boarding process.
I have a good experience and got good hospitality from cabin crew thank you.
Related info for your journey
Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
How popular is this Manila to Kota Kinabalu flight route?
This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 1,386 users in the past month. Keep an eye out for changes in search interest prior to high and low season.
How long is the flight from Manila to Kota Kinabalu?
There are many flights that can get you from Manila to Kota Kinabalu in 2h 10m. Fly via Philippines AirAsia to get the fastest option. The distance between Manila and Kota Kinabalu is about 1096 km. Generally, flights for this route are direct.
What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?
Flying on Philippines AirAsia is currently your cheapest option to Kota Kinabalu, with prices starting at ₱4,292. Additional round-trip tickets that might be worth considering are offered by Scoot and Malaysia Airlines, with the lowest prices starting at ₱9,407 and ₱17,877, respectively. You may be able to fly from Manila to Kota Kinabalu for 32% less than the average price by searching for these airlines.
What are the cheapest flights from Manila to Kota Kinabalu?
On average you can expect to pay ₱4,999 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is ₱2,234 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at ₱6,219.
Can I find deals for business class flights from Manila to Kota Kinabalu?
Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.
What is the cheapest month to book a flight from Manila to Kota Kinabalu?
Currently, January is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱83). Flying from Manila to Kota Kinabalu in September is currently the most expensive (average of ₱115). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
Browse thousands of different options on Cheapflights for your next trip
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Fly from Manila to Kota Kinabalu on these airlines
Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on August 28, 2025.
Top 3 airlines flying from Manila to Kota Kinabalu
Discover the top 3 airlines that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated August 28, 2025.
Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.
How does Cheapflights help users find flights from Manila to Kota Kinabalu?
Cheapflights makes it easy to find Manila to Kota Kinabalu flights by helping our users search from 900+ travel sites for deals. We also provide you with filters for cabin, price, airline, airports, number of stops, and many more to narrow down that perfect flight.
Why should you use Cheapflights to find cheap flight tickets from Manila to Kota Kinabalu?
By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Manila.
Can Cheapflights find flights from Manila to Kota Kinabalu with no change fees?
Need flexible booking options for your flight to Kota Kinabalu from Manila? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.
Can Cheapflights notify me if prices for flights from Manila to Kota Kinabalu become cheaper?
Yes, Cheapflights offers price alerts on Manila to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.
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