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Cheap flights from Cebu to Kota Kinabalu from ₱5,687

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/28. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
may. 21 — may. 281
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on abril 21, 2026.

sáb. 7/2512:55 pm
CEB
-
BKI
1 stop22h 20m
Scoot
lun. 7/279:50 am
BKI
-
CEB
1 stop26h 05m
Scoot
Deal found 4/20₱12,870
vie. 7/243:05 am
CEB
-
BKI
1 stop13h 40m
Multiple Airlines
lun. 7/271:00 pm
BKI
-
CEB
2 stops12h 00m
Multiple Airlines
Deal found 4/20₱17,599
lun. 5/182:00 am
CEB
-
BKI
2 stops29h 25m
Multiple Airlines
mar. 5/269:05 pm
BKI
-
CEB
2 stops24h 55m
Multiple Airlines
Deal found 4/20₱23,466
jue. 4/233:05 am
CEB
-
BKI
1 stop19h 50m
Multiple Airlines
lun. 4/2711:20 pm
BKI
-
CEB
1 stop12h 20m
Multiple Airlines
Deal found 4/16₱25,501
dom. 10/113:40 pm
CEB
-
BKI
1 stop17h 10m
Singapore Airlines
jue. 10/1512:15 pm
BKI
-
CEB
1 stop26h 35m
Singapore Airlines
Deal found 4/20₱28,314

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated abril 21, 2026.

Round-trip from

₱12,870

One-way from

₱5,687

Popular in

January

Cheapest in

February
Scoot
  • Scoot
  • 7/25-7/27
  • 2 total stops
  • 48h 25m total
  • Cebu to Kota Kinabalu
Search Deals
Scoot
  • Scoot
  • 7/28
  • 1 total stop
  • 17h 25m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 22% potential increase in price (₱213,767 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 14% potential price decrease (₱94,816 potential savings vs. average RT price).
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated abril 21, 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip
Quickest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

lun. 5/18

2:00 am-11:15 am

1 stop9h 15m

Kota Kinabalu

lun. 5/25

1:45 am-12:35 am

1 stop22h 50m

₱23,645

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

dom. 10/11

3:40 pm-8:50 am

1 stop17h 10m

Kota Kinabalu

jue. 10/15

12:15 pm-2:50 pm

1 stop26h 35m

₱28,314

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

dom. 10/11

11:35 pm-5:00 pm

2 stops17h 25m

Kota Kinabalu

jue. 10/15

4:20 pm-4:10 am

2 stops35h 50m

₱34,719

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

dom. 10/11

2:30 pm-10:45 am

1 stop20h 15m

Kota Kinabalu

jue. 10/15

11:30 am-4:55 am

2 stops17h 25m

₱36,755
Cheapest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

lun. 7/27

2:00 am-11:15 am

1 stop9h 15m

₱5,747
Quickest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

jue. 6/4

12:55 pm-9:00 pm

1 stop8h 05m

₱9,039

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mié. 5/6

2:30 pm-8:40 am

1 stop18h 10m

₱9,578

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mié. 5/20

12:55 pm-7:25 am

2 stops18h 30m

₱10,655

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

vie. 5/22

2:00 am-7:45 pm

1 stop17h 45m

₱10,955

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

jue. 5/21

12:55 pm-7:25 am

2 stops18h 30m

₱11,733

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/21

Showing 1-10 of 15 resultsSorted by cheapest first
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱28,314, Singapore Airlines can have you in Kota Kinabalu from Cebu in 17h 10m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated abril 21, 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱9,273Average₱11,228FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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