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Cheap flights from Cebu to Kota Kinabalu from ₱6,535

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 8/21. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Aug 19 — Aug 261
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on July 20, 2026.

Wed 11/181:00 pm
CEB
-
BKI
1 stop5h 30m
Multiple Airlines
Sun 11/226:55 pm
BKI
-
CEB
1 stop6h 35m
Multiple Airlines
Deal found 7/16₱12,576
Sun 7/262:10 am
CEB
-
BKI
1 stop23h 10m
Multiple Airlines
Wed 7/291:45 am
BKI
-
CEB
1 stop19h 20m
Multiple Airlines
Deal found 7/19₱15,227
Wed 9/236:15 pm
CEB
-
BKI
1 stop7h 05m
Multiple Airlines
Sun 9/279:05 am
BKI
-
CEB
1 stop12h 50m
Multiple Airlines
Deal found 7/15₱17,015
Thu 8/1312:55 pm
CEB
-
BKI
1 stop19h 35m
Multiple Airlines
Sun 8/161:45 am
BKI
-
CEB
1 stop14h 20m
Multiple Airlines
Deal found 7/17₱18,556
Mon 12/218:05 am
CEB
-
BKI
1 stop10h 25m
Multiple Airlines
Fri 12/256:55 pm
BKI
-
CEB
1 stop6h 05m
Multiple Airlines
Deal found 7/16₱19,851
Sat 8/156:15 pm
CEB
-
BKI
2 stops14h 20m
Multiple Airlines
Sun 8/161:45 am
BKI
-
CEB
1 stop5h 35m
Multiple Airlines
Deal found 7/19₱20,714
Thu 8/64:20 am
CEB
-
BKI
2 stops18h 05m
Multiple Airlines
Fri 8/71:45 am
BKI
-
CEB
1 stop5h 35m
Multiple Airlines
Deal found 7/20₱21,330

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated July 20, 2026.

Round-trip from

₱12,576

One-way from

₱6,535
11/18-11/22
  • 11/18-11/22
  • 2 total stops
  • 12h 05m total
  • Cebu to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 8/21
  • 1 total stop
  • 7h 05m total
  • Cebu to Kota Kinabalu
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated July 20, 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip
Quickest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 11/18

1:00 pm-6:30 pm

1 stop5h 30m

Kota Kinabalu

Sun 11/22

6:55 pm-1:30 am

1 stop6h 35m

₱12,576

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 8/13

12:55 pm-8:30 am

1 stop19h 35m

Kota Kinabalu

Sun 8/16

1:45 am-4:05 pm

1 stop14h 20m

₱18,556

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 9/23

6:15 pm-1:20 am

1 stop7h 05m

Kota Kinabalu

Sun 9/27

6:15 pm-4:30 pm

2 stops22h 15m

₱20,714

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 8/15

12:55 pm-1:05 pm

1 stop24h 10m

Kota Kinabalu

Mon 8/17

7:00 am-9:55 pm

1 stop14h 55m

₱23,180

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 12/21

8:00 am-6:30 pm

1 stop10h 30m

Kota Kinabalu

Fri 12/25

6:55 pm-7:30 am

1 stop12h 35m

₱27,557

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 12/21

10:35 am-6:30 pm

1 stop7h 55m

Kota Kinabalu

Fri 12/25

11:05 am-9:25 pm

1 stop10h 20m

₱29,160

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 8/20

12:00 pm-12:30 am

1 stop12h 30m

Kota Kinabalu

Mon 8/24

1:15 am-10:50 am

1 stop9h 35m

₱30,516

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 9/23

7:45 pm-6:20 pm

2 stops22h 35m

Kota Kinabalu

Sun 9/27

5:20 am-6:25 am

2 stops25h 05m

₱31,071

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 12/21

11:35 pm-6:20 pm

2 stops18h 45m

Kota Kinabalu

Fri 12/25

6:00 pm-10:05 am

2 stops16h 05m

₱37,976
Cheapest one-way
Quickest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 8/21

6:15 pm-1:20 am

1 stop7h 05m

₱6,535

Flights are sorted by cheapest round-trip flights first.

Deals found on 7/16

Showing 1-10 of 12 resultsSorted by cheapest first
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱27,557, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 10h 30m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights
Davao City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated July 20, 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱9,914Average₱11,995FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

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