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Cheap flights from Cebu to Kota Kinabalu from ₱5,371

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 8/2. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
May 10 — May 171
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on April 10, 2026.

Wed 5/136:05 pm
CEB
-
BKI
1 stop7h 15m
Multiple Airlines
Wed 6/1011:00 am
BKI
-
CEB
1 stop10h 25m
Multiple Airlines
Deal found 4/8₱11,637
Thu 5/143:05 am
CEB
-
BKI
1 stop11h 15m
Multiple Airlines
Wed 6/1010:10 am
BKI
-
CEB
1 stop11h 15m
Multiple Airlines
Deal found 4/8₱12,830
Wed 5/133:05 am
CEB
-
BKI
1 stop11h 15m
Multiple Airlines
Wed 6/1011:00 am
BKI
-
CEB
1 stop10h 25m
Multiple Airlines
Deal found 4/8₱13,725
Sun 5/103:05 am
CEB
-
BKI
1 stop11h 15m
Multiple Airlines
Wed 6/1011:00 am
BKI
-
CEB
1 stop10h 25m
Multiple Airlines
Deal found 4/8₱14,322
Tue 5/123:05 am
CEB
-
BKI
1 stop12h 30m
Multiple Airlines
Fri 6/121:00 pm
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 4/8₱15,157
Thu 5/143:05 am
CEB
-
BKI
1 stop11h 15m
Multiple Airlines
Sat 6/1311:00 am
BKI
-
CEB
1 stop10h 25m
Multiple Airlines
Deal found 4/8₱15,217
Tue 5/123:05 am
CEB
-
BKI
1 stop12h 30m
Multiple Airlines
Sat 6/131:00 pm
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 4/8₱15,277
Fri 5/153:05 am
CEB
-
BKI
1 stop7h 25m
Multiple Airlines
Mon 6/810:30 pm
BKI
-
CEB
1 stop15h 00m
Multiple Airlines
Deal found 4/8₱15,515
Sat 5/93:05 am
CEB
-
BKI
1 stop7h 25m
Multiple Airlines
Tue 6/99:05 am
BKI
-
CEB
1 stop12h 20m
Multiple Airlines
Deal found 4/8₱15,635
Tue 5/123:05 am
CEB
-
BKI
1 stop9h 25m
Multiple Airlines
Mon 6/810:30 pm
BKI
-
CEB
1 stop13h 10m
Multiple Airlines
Deal found 4/8₱15,814
Wed 5/133:05 am
CEB
-
BKI
1 stop11h 15m
Multiple Airlines
Fri 6/1211:00 am
BKI
-
CEB
1 stop10h 25m
Multiple Airlines
Deal found 4/8₱16,112
Wed 5/133:05 am
CEB
-
BKI
1 stop11h 15m
Multiple Airlines
Thu 6/111:00 pm
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 4/8₱16,172

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated April 10, 2026.

Round-trip from

₱11,637

One-way from

₱5,371

Popular in

January

Cheapest in

February
5/13-6/10
  • 5/13-6/10
  • 2 total stops
  • 17h 40m total
  • Cebu to Kota Kinabalu
Search Deals
8/2
  • 8/2
  • 1 total stop
  • 17h 55m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 22% potential increase in price (₱212,439 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 14% potential price decrease (₱94,230 potential savings vs. average RT price).
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated April 10, 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 7/10

2:00 am-7:45 pm

1 stop17h 45m

Kota Kinabalu

Wed 7/15

9:50 am-11:55 am

1 stop26h 05m

₱25,959

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 5/12

7:20 pm-12:30 am

1 stop29h 10m

Kota Kinabalu

Sun 6/7

1:15 am-10:50 am

1 stop9h 35m

₱31,449

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 5/11

11:35 pm-3:35 pm

2 stops16h 00m

Kota Kinabalu

Tue 6/9

5:20 am-11:25 pm

2 stops18h 05m

₱34,611

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 5/11

11:35 pm-6:20 pm

2 stops18h 45m

Kota Kinabalu

Sun 6/7

6:50 am-9:10 pm

2 stops14h 20m

₱34,611
Quickest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 5/13

3:10 am-3:35 pm

2 stops12h 25m

Kota Kinabalu

Fri 6/12

5:45 pm-10:35 am

2 stops16h 50m

₱34,611

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 7/11

9:20 am-3:35 pm

2 stops30h 15m

Kota Kinabalu

Wed 7/15

5:20 am-5:40 am

2 stops24h 20m

₱34,731

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 9/20

12:05 am-3:35 pm

2 stops15h 30m

Kota Kinabalu

Fri 9/25

4:20 pm-1:10 pm

2 stops20h 50m

₱38,311

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 5/13

2:30 pm-5:00 pm

1 stop26h 30m

Kota Kinabalu

Thu 6/11

5:45 pm-9:10 pm

2 stops27h 25m

₱39,326
Cheapest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 8/2

3:05 am-9:00 pm

1 stop17h 55m

₱5,371

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 5/2

10:35 pm-1:20 am

1 stop26h 45m

₱8,653

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/10

Showing 1-10 of 16 resultsSorted by cheapest first
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱34,611, Scoot can have you in Kota Kinabalu from Cebu in 16h. There are 999 km between Cebu and Kota Kinabalu. Both multi-stop and direct flights can be found to your destination and back.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated April 10, 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,486Average₱11,054FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Cebu to Kota Kinabalu. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

Cheapflights simply makes it quick and affordable to book flights from Cebu to Kota Kinabalu by bringing together all flight options from hundreds of airlines and agencies online — and put it in one place for you to choose from. Plus, Cheapflights is 100% free to use for all.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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