How long is the flight from Cebu to Kota Kinabalu?

For as low as ₱19,698, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 11h 55m. There are 999 km between Cebu and Kota Kinabalu.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

What is the cheapest time of day to fly from CEB to BKI?

When flying from Cebu to Kota Kinabalu, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

What airport do you fly into for flights to Kota Kinabalu from Cebu?

Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

How can I find direct flights from Cebu to Kota Kinabalu?

After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

Can I find deals for business class flights from Cebu to Kota Kinabalu?

Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

₱7,254+ Cheap Flights from Cebu to Kota Kinabalu

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

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Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 5, 2026.

Tue 9/2910:00 pm -

1 stop27h 20m

Mon 12/77:05 pm -

1 stop5h 45m

Deal found 9/2₱16,759

Fri 11/66:25 am -

1 stop11h 55m

Tue 11/1010:40 pm -

1 stop22h 45m

Deal found 9/4₱18,885

Thu 10/156:15 pm -

2 stops14h 20m

Sun 10/181:45 am -

1 stop5h 35m

Deal found 9/3₱20,011

Sun 9/206:15 pm -

1 stop7h 05m

Sun 9/276:00 am -

1 stop15h 55m

Deal found 9/3₱21,011

Mon 12/216:25 am -

1 stop11h 55m

Fri 12/257:05 pm -

1 stop10h 50m

Deal found 9/1₱25,326

Mon 12/216:25 am -

1 stop11h 55m

Fri 12/2511:40 am -

1 stop9h 45m

Deal found 9/2₱26,077

Find flight deals from Cebu to Kota Kinabalu

Round-trip from	₱16,759
One-way from	₱6,754

9/29-12/7
2 total stops
33h 05m total
Cebu to Kota Kinabalu

Search Deals

Scoot
10/5-12/31
1 total stop
9h 15m total
Cebu to Kota Kinabalu

Search Deals

Cheapflights Fare Finder

Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 9/29

10:00 pm-1:20 am

1 stop27h 20m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱7,254

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 11/3

10:30 pm-6:20 pm

1 stop19h 50m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱7,879

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 9/29

10:00 pm-1:20 am

1 stop27h 20m

Kota Kinabalu

Mon 12/7

7:05 pm-12:50 am

1 stop5h 45m

₱16,759

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Fri 11/6

6:25 am-6:20 pm

1 stop11h 55m

Kota Kinabalu

Tue 11/10

10:40 pm-9:25 pm

1 stop22h 45m

₱18,885

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 1/4

6:25 am-6:20 pm

1 stop11h 55m

Kota Kinabalu

Fri 1/8

7:05 pm-10:00 am

1 stop14h 55m

₱19,698

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Thu 10/15

2:50 pm-8:35 am

1 stop17h 45m

Kota Kinabalu

Sun 10/18

1:45 am-5:25 pm

1 stop15h 40m

₱20,324

Quickest round-trip

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 9/28

2:00 am-1:00 pm

2 stops11h 00m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱21,136

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 12/21

6:25 am-6:20 pm

1 stop11h 55m

Kota Kinabalu

Fri 12/25

7:05 pm-5:55 am

1 stop10h 50m

₱23,263

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Sun 9/20

6:25 am-1:20 am

1 stop18h 55m

Kota Kinabalu

Sun 9/27

10:30 pm-5:25 pm

2 stops18h 55m

₱23,700

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 12/21

6:25 am-6:20 pm

1 stop11h 55m

Kota Kinabalu

Fri 12/25

11:40 am-9:25 pm

1 stop9h 45m

₱26,077

Flights are sorted by cheapest round-trip flights first.

Deals found on 9/2

Showing 1-10 of 11 resultsSorted by cheapest first

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.

CEB-BKI

Estimated round-trip price

Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

PHCEB-BKI

CEB-BKI

No data available for this route at this time. Please check back soon.

Related info for your journey

What airport do you fly into for flights to Kota Kinabalu from Cebu?
Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.
How long is the flight from Cebu to Kota Kinabalu?
For as low as ₱19,698, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 11h 55m. There are 999 km between Cebu and Kota Kinabalu.
Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?
Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.
How can I find direct flights from Cebu to Kota Kinabalu?
After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.
Can I find deals for business class flights from Cebu to Kota Kinabalu?
Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

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Top airline flying from Cebu to Kota Kinabalu

Airline	Cheapest	Average	Flexibility	On-time
Philippines AirAsia	Cheapest₱10,057	Average₱12,997	FlexibilityNo cancel fee	On-time53%	Search Philippines AirAsia flights

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

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Cheap flights from Cebu to Kota Kinabalu from ₱7,254

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 9/29. Fares are subject to change and may not be available on all flights or dates of travel.

Cheap flight deals from Cebu to Kota Kinabalu

Cheapest flights from Cebu to Kota KinabaluExplore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 5, 2026.

Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 5, 2026.

Best flights from Cebu to Kota KinabaluDiscover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 5, 2026.

Discover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 5, 2026.

Last-minute flights from Cebu to Kota KinabaluDiscover last-minute flight deals from Cebu to Kota Kinabalu. Data last updated September 5, 2026 and is based on user searches.

Discover last-minute flight deals from Cebu to Kota Kinabalu. Data last updated September 5, 2026 and is based on user searches.

One-way flights from Cebu to Kota KinabaluSearch for one-way flight options from Cebu to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated September 5, 2026.

Search for one-way flight options from Cebu to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated September 5, 2026.

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Related info for your journey

What airport do you fly into for flights to Kota Kinabalu from Cebu?

How long is the flight from Cebu to Kota Kinabalu?

Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

How can I find direct flights from Cebu to Kota Kinabalu?

Can I find deals for business class flights from Cebu to Kota Kinabalu?

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Cebu to Kota Kinabalu

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Complete your trip

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Direct flights to Sabah

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Cebu and Kota Kinabalu flights

Browse other Cebu and Kota Kinabalu flight options. Last updated on September 5, 2026.

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Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

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Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 5, 2026.

Best flights from Cebu to Kota Kinabalu
Discover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 5, 2026.

Last-minute flights from Cebu to Kota Kinabalu
Discover last-minute flight deals from Cebu to Kota Kinabalu. Data last updated September 5, 2026 and is based on user searches.

One-way flights from Cebu to Kota Kinabalu
Search for one-way flight options from Cebu to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated September 5, 2026.