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Cheap flights from Cebu to Kota Kinabalu from ₱4,654

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 2/10. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Dec 14 — Dec 211
1 adult
1 adult, Economy, 0 bags

Find flight deals from Cebu to Kota Kinabalu

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Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 14, 2025.

Sat 12/273:05 amCEB - BKI
1 stop15h 25mPhilippines AirAsia
Sun 1/46:55 pmBKI - CEB
1 stop26h 50mPhilippines AirAsia
Deal found 11/13₱13,904
Sun 12/2811:40 pmCEB - BKI
1 stop18h 50mMultiple Airlines
Sun 1/46:00 amBKI - CEB
2 stops15h 25mMultiple Airlines
Deal found 11/13₱15,435
Sat 12/273:20 amCEB - BKI
2 stops12h 00mPhilippine Airlines
Sun 1/45:20 amBKI - CEB
2 stops17h 40mPhilippine Airlines
Deal found 11/13₱31,283

Cheap flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated November 14, 2025.

Round-trip from

₱13,904

One-way from

₱4,654

Popular in

March

Cheapest in

August

Average price

₱9,485
Philippines AirAsia
  • Philippines AirAsia
  • 12/28-1/4
  • 2 total stops
  • 19h 35m total
  • Cebu to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 2/10
  • 1 total stop
  • 15h 25m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 33% potential increase in price (₱383,143 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 10% potential price decrease (₱75,028 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in November 2025
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated November 14, 2025.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Depart

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 12/28

6:35 am-6:30 pm

1 stop11h 55m

Kota Kinabalu

Sun 1/4

6:55 pm-2:35 am

1 stop7h 40m

₱13,904

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 12/28

11:40 pm-6:30 pm

1 stop18h 50m

Kota Kinabalu

Sun 1/4

6:00 am-9:25 pm

2 stops15h 25m

₱15,435

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 3/29

10:05 pm-3:35 pm

2 stops17h 30m

Kota Kinabalu

Mon 3/30

5:45 pm-4:55 am

2 stops35h 10m

₱28,750

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 12/27

3:20 am-3:20 pm

2 stops12h 00m

Kota Kinabalu

Sun 1/4

5:20 am-11:00 pm

2 stops17h 40m

₱31,283

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 2/10

3:05 am-6:30 pm

1 stop15h 25m

₱4,654

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 2/12

11:45 pm-6:30 pm

1 stop18h 45m

₱4,890

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 2/8

6:35 am-6:30 pm

1 stop11h 55m

₱4,949

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 2/13

8:25 am-6:30 pm

1 stop10h 05m

₱5,008

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 2/11

5:30 am-6:30 pm

1 stop13h 00m

₱5,125

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 2/7

3:20 am-2:15 pm

1 stop10h 55m

₱5,774

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/12

Showing 1-10 of 13 results
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Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

What is the cheapest time of day to fly from CEB to BKI?

Find hourly flight availability from Cebu to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated November 14, 2025.

It’s typically best to fly out from Cebu to Kota Kinabalu in the afternoon. Doing so could potentially save you 15% on the flight price compared to flying at noon, which is usually more expensive.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱13,904, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 11h 55m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated November 14, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,378Average₱11,155FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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