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Cheap flights from Cebu to Kota Kinabalu from ₱4,603

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/12. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Apr 7 — Apr 141
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on March 8, 2026.

Sun 7/123:05 am
CEB
-
BKI
1 stop15h 30m
Multiple Airlines
Tue 7/215:15 pm
BKI
-
CEB
1 stop18h 25m
Multiple Airlines
Deal found 3/5₱7,081
Fri 4/173:05 am
CEB
-
BKI
1 stop15h 30m
Multiple Airlines
Sat 4/258:40 pm
BKI
-
CEB
1 stop15h 00m
Multiple Airlines
Deal found 3/4₱8,793
Wed 4/2212:55 pm
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Wed 4/296:00 am
BKI
-
CEB
1 stop15h 25m
Multiple Airlines
Deal found 3/7₱8,970
Sat 4/113:05 am
CEB
-
BKI
1 stop7h 25m
Multiple Airlines
Tue 4/2111:00 am
BKI
-
CEB
1 stop10h 25m
Multiple Airlines
Deal found 3/3₱9,206
Mon 4/203:05 am
CEB
-
BKI
1 stop13h 40m
Multiple Airlines
Tue 4/286:15 pm
BKI
-
CEB
1 stop17h 25m
Multiple Airlines
Deal found 3/7₱9,265
Mon 4/133:05 am
CEB
-
BKI
1 stop8h 50m
Multiple Airlines
Mon 4/201:45 am
BKI
-
CEB
1 stop19h 25m
Multiple Airlines
Deal found 3/3₱12,688
Thu 4/93:10 am
CEB
-
BKI
1 stop22h 10m
Multiple Airlines
Mon 4/201:45 am
BKI
-
CEB
1 stop19h 25m
Multiple Airlines
Deal found 3/3₱13,042
Thu 4/92:30 pm
CEB
-
BKI
1 stop8h 25m
Multiple Airlines
Mon 4/201:45 am
BKI
-
CEB
1 stop5h 35m
Multiple Airlines
Deal found 3/3₱13,868
Mon 4/136:05 pm
CEB
-
BKI
1 stop7h 15m
Philippines AirAsia
Mon 4/201:45 am
BKI
-
CEB
1 stop5h 35m
Philippines AirAsia
Deal found 3/3₱14,104

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated March 8, 2026.

Round-trip from

₱7,081

One-way from

₱4,603

Popular in

January

Cheapest in

February

Average price

₱10,858
7/12-7/21
  • 7/12-7/21
  • 2 total stops
  • 33h 55m total
  • Cebu to Kota Kinabalu
Search Deals
7/12
  • 7/12
  • 1 total stop
  • 21h 00m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 21% potential increase in price (₱198,870 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 12% potential price decrease (₱82,087 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in March 2026
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated March 8, 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 7/12

3:05 am-6:35 pm

1 stop15h 30m

Kota Kinabalu

Tue 7/21

5:15 pm-11:40 am

1 stop18h 25m

₱7,081

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 4/17

3:05 am-6:35 pm

1 stop15h 30m

Kota Kinabalu

Sat 4/25

8:40 pm-11:40 am

1 stop15h 00m

₱8,793
Quickest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 4/13

6:05 pm-1:20 am

1 stop7h 15m

Kota Kinabalu

Mon 4/20

1:45 am-7:20 am

1 stop5h 35m

₱14,104

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 4/15

2:30 pm-10:55 pm

1 stop8h 25m

Kota Kinabalu

Mon 4/20

1:45 am-7:20 am

1 stop5h 35m

₱15,107

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 4/20

2:00 am-9:00 pm

2 stops19h 00m

Kota Kinabalu

Tue 4/28

6:45 pm-11:55 am

2 stops17h 10m

₱15,756

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 6/21

7:20 pm-12:30 am

1 stop29h 10m

Kota Kinabalu

Tue 6/23

1:15 am-6:10 pm

1 stop16h 55m

₱23,546

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 8/3

3:40 pm-11:15 am

1 stop19h 35m

Kota Kinabalu

Thu 8/6

12:15 pm-2:50 pm

1 stop26h 35m

₱27,264

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 8/3

11:35 pm-6:20 pm

2 stops18h 45m

Kota Kinabalu

Thu 8/6

5:20 am-1:10 pm

2 stops31h 50m

₱28,739
Cheapest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 7/12

4:20 am-1:20 am

1 stop21h 00m

₱4,603

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 7/15

5:10 am-1:20 am

1 stop20h 10m

₱4,721

Flights are sorted by cheapest round-trip flights first.

Deals found on 3/3

Showing 1-10 of 14 resultsSorted by cheapest first
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱14,104, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 7h 15m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated March 8, 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,392Average₱10,989FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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