Find flights
When to book
FAQs

Cheap flights from Cebu to Kota Kinabalu from ₱4,353

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 2/28. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Dec 22 — Dec 291
1 adult
1 adult, Economy, 0 bags

Find flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on November 22, 2025.

Thu 12/41:20 amCEB - BKI
1 stop17h 10mPhilippines AirAsia
Mon 12/86:55 pmBKI - CEB
1 stop26h 50mPhilippines AirAsia
Deal found 11/21₱11,059
Thu 12/43:20 amCEB - BKI
2 stops11h 00mMultiple Airlines
Mon 12/88:20 pmBKI - CEB
1 stop16h 40mMultiple Airlines
Deal found 11/21₱13,589
Sun 12/213:05 amCEB - BKI
1 stop15h 25mMultiple Airlines
Fri 12/2610:40 pmBKI - CEB
1 stop22h 45mMultiple Airlines
Deal found 11/22₱13,824

Cheap flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated November 22, 2025.

Round-trip from

₱11,059

One-way from

₱4,353

Popular in

March

Cheapest in

February

Average price

₱9,471
Philippines AirAsia
  • Philippines AirAsia
  • 12/4-12/8
  • 2 total stops
  • 44h 00m total
  • Cebu to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 2/28
  • 1 total stop
  • 15h 25m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 21% potential increase in price (₱197,975 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 10% potential price decrease (₱69,448 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in November 2025
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated November 22, 2025.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Depart

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 12/4

1:20 am-6:30 pm

1 stop17h 10m

Kota Kinabalu

Mon 12/8

6:55 pm-9:45 pm

1 stop26h 50m

₱11,059

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 1/5

8:00 am-6:30 pm

1 stop10h 30m

Kota Kinabalu

Mon 1/12

6:55 pm-2:35 am

1 stop7h 40m

₱13,412

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 12/4

3:20 am-2:20 pm

2 stops11h 00m

Kota Kinabalu

Mon 12/8

8:20 pm-1:00 pm

1 stop16h 40m

₱13,589

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 1/6

11:45 pm-6:30 pm

1 stop18h 45m

Kota Kinabalu

Tue 1/13

11:40 am-9:25 pm

1 stop9h 45m

₱13,765

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 12/21

3:05 am-6:30 pm

1 stop15h 25m

Kota Kinabalu

Fri 12/26

10:40 pm-9:25 pm

1 stop22h 45m

₱13,824

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 1/5

8:00 am-6:30 pm

1 stop10h 30m

Kota Kinabalu

Mon 1/12

6:00 am-9:25 pm

2 stops15h 25m

₱14,706

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 2/28

3:05 am-6:30 pm

1 stop15h 25m

₱4,353

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 3/7

11:45 pm-6:30 pm

1 stop18h 45m

₱4,647

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 12/18

11:40 pm-6:30 pm

1 stop18h 50m

₱5,471

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 3/6

3:20 am-11:00 pm

1 stop19h 40m

₱6,177

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/20

Showing 1-10 of 13 results
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

What is the cheapest time of day to fly from CEB to BKI?

Find hourly flight availability from Cebu to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated November 22, 2025.

It’s typically best to fly out from Cebu to Kota Kinabalu in the afternoon. Doing so could potentially save you 15% on the flight price compared to flying at noon, which is usually more expensive.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱11,059, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 17h 10m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights
Davao City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated November 22, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,366Average₱11,139FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Cebu to Kota Kinabalu. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

Cheapflights simply makes it quick and affordable to book flights from Cebu to Kota Kinabalu by bringing together all flight options from hundreds of airlines and agencies online — and put it in one place for you to choose from. Plus, Cheapflights is 100% free to use for all.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book with Flexibility

Our users can plan ahead with confidence and find flights with no change fees

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.