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Cheap flights from Cebu to Kota Kinabalu from ₱7,460

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/14. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
lug 6 — lug 131
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on giugno 6, 2026.

mar 6/302:10 am
CEB
-
BKI
1 stop23h 10m
Multiple Airlines
ven 7/31:45 am
BKI
-
CEB
1 stop19h 45m
Multiple Airlines
Deal found 6/3₱16,461
mar 6/302:10 am
CEB
-
BKI
1 stop23h 10m
Multiple Airlines
dom 7/51:45 am
BKI
-
CEB
1 stop19h 20m
Multiple Airlines
Deal found 6/3₱16,955
dom 6/2810:00 pm
CEB
-
BKI
1 stop27h 20m
Philippines AirAsia
ven 7/31:45 am
BKI
-
CEB
1 stop19h 45m
Philippines AirAsia
Deal found 6/3₱17,201
ven 7/177:20 pm
CEB
-
BKI
1 stop6h 00m
Multiple Airlines
dom 7/191:45 am
BKI
-
CEB
1 stop16h 10m
Multiple Airlines
Deal found 6/2₱17,263
ven 8/77:05 pm
CEB
-
BKI
1 stop6h 15m
Multiple Airlines
ven 8/141:45 am
BKI
-
CEB
1 stop6h 15m
Multiple Airlines
Deal found 6/6₱17,386
ven 8/77:20 pm
CEB
-
BKI
1 stop6h 00m
Multiple Airlines
lun 8/101:45 am
BKI
-
CEB
1 stop6h 15m
Multiple Airlines
Deal found 6/6₱17,448
gio 7/211:40 pm
CEB
-
BKI
1 stop25h 40m
Multiple Airlines
mer 7/81:45 am
BKI
-
CEB
1 stop17h 25m
Multiple Airlines
Deal found 6/4₱17,509
mer 7/157:55 am
CEB
-
BKI
1 stop17h 25m
Multiple Airlines
lun 7/201:45 am
BKI
-
CEB
1 stop5h 55m
Multiple Airlines
Deal found 6/2₱17,571
lun 6/296:05 pm
CEB
-
BKI
1 stop7h 15m
Philippines AirAsia
mer 7/11:45 am
BKI
-
CEB
1 stop17h 25m
Philippines AirAsia
Deal found 6/3₱17,633
dom 8/97:20 pm
CEB
-
BKI
1 stop6h 00m
Multiple Airlines
ven 8/141:45 am
BKI
-
CEB
1 stop6h 15m
Multiple Airlines
Deal found 6/6₱17,694
lun 8/106:05 pm
CEB
-
BKI
1 stop7h 15m
Multiple Airlines
ven 8/141:45 am
BKI
-
CEB
1 stop6h 15m
Multiple Airlines
Deal found 6/6₱17,756
mer 7/157:20 pm
CEB
-
BKI
1 stop6h 00m
Multiple Airlines
dom 7/191:45 am
BKI
-
CEB
1 stop16h 10m
Multiple Airlines
Deal found 6/2₱18,003

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated giugno 6, 2026.

Round-trip from

₱16,461

One-way from

₱7,460
Philippines AirAsia
  • Philippines AirAsia
  • 6/30-7/3
  • 2 total stops
  • 42h 55m total
  • Cebu to Kota Kinabalu
Search Deals
7/14
  • 7/14
  • 1 total stop
  • 23h 10m total
  • Cebu to Kota Kinabalu
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated giugno 6, 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip
Quickest round-trip

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

ven 7/17

7:20 pm-1:20 am

1 stop6h 00m

Kota Kinabalu

dom 7/19

1:45 am-5:55 pm

1 stop16h 10m

₱17,263

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

gio 7/2

11:40 pm-1:20 am

1 stop25h 40m

Kota Kinabalu

mer 7/8

1:45 am-7:10 pm

1 stop17h 25m

₱17,509

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

sab 6/20

10:35 pm-1:20 am

1 stop26h 45m

Kota Kinabalu

ven 6/26

9:00 pm-9:05 pm

2 stops24h 05m

₱23,058

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

ven 10/16

2:00 am-7:45 pm

1 stop17h 45m

Kota Kinabalu

mar 10/20

12:15 pm-1:30 am

1 stop13h 15m

₱27,867

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mer 7/1

11:35 pm-6:20 pm

2 stops18h 45m

Kota Kinabalu

lun 7/6

5:45 pm-1:10 pm

2 stops19h 25m

₱35,944

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

sab 6/27

12:05 am-3:35 pm

2 stops15h 30m

Kota Kinabalu

gio 7/2

5:45 pm-11:25 pm

2 stops29h 40m

₱35,944

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

sab 10/17

9:20 am-9:35 pm

2 stops36h 15m

Kota Kinabalu

mar 10/20

5:20 am-4:10 am

2 stops22h 50m

₱37,608

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

ven 7/10

3:10 am-6:20 pm

2 stops15h 10m

Kota Kinabalu

gio 7/16

4:20 pm-9:10 pm

2 stops28h 50m

₱37,670
Cheapest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mar 7/14

2:10 am-1:20 am

1 stop23h 10m

₱7,460

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mer 6/17

4:35 am-1:20 am

2 stops20h 45m

₱10,913

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/5

Showing 1-10 of 16 resultsSorted by cheapest first
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱27,867, Scoot can have you in Kota Kinabalu from Cebu in 17h 45m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights
Davao City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated giugno 6, 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,768Average₱11,864FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

Cheapflights simply makes it quick and affordable to book flights from Cebu to Kota Kinabalu by bringing together all flight options from hundreds of airlines and agencies online — and put it in one place for you to choose from. Plus, Cheapflights is 100% free to use for all.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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