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Cheap flights from Cebu to Kota Kinabalu from ₱4,595

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/14. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
jan 6 — jan 131
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Best flights from Cebu to Kota Kinabalu
Discover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated december 7, 2025.

sön 1/252:35 amCEB - BKI
1 stop8h 30mSingapore Airlines
fre 1/308:00 pmBKI - CEB
1 stop18h 50mSingapore Airlines
Deal found 12/4₱28,569
mån 1/2610:10 pmCEB - BKI
2 stops17h 10mPhilippine Airlines
fre 1/305:20 amBKI - CEB
2 stops18h 25mPhilippine Airlines
Deal found 12/4₱28,746

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated december 7, 2025.

Round-trip from

₱9,719

One-way from

₱4,595

Popular in

March

Cheapest in

February

Average price

₱13,136
4/1-4/6
  • 4/1-4/6
  • 2 total stops
  • 39h 20m total
  • Cebu to Kota Kinabalu
Search Deals
1/14
  • 1/14
  • 2 total stops
  • 42h 15m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 16% potential increase in price (₱153,665 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 9% potential price decrease (₱66,524 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in December 2025
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated december 7, 2025.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Depart

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

sön 1/25

2:35 am-11:05 am

1 stop8h 30m

Kota Kinabalu

fre 1/30

8:00 pm-2:50 pm

1 stop18h 50m

₱28,569

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mån 1/26

10:10 pm-3:20 pm

2 stops17h 10m

Kota Kinabalu

fre 1/30

5:20 am-11:45 pm

2 stops18h 25m

₱28,746

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

ons 1/14

2:00 pm-8:15 am

2 stops42h 15m

₱4,595

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

tors 4/16

10:30 am-1:20 am

1 stop14h 50m

₱4,771

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

tis 1/13

2:00 pm-8:15 am

2 stops42h 15m

₱4,771

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

mån 1/12

6:35 am-6:30 pm

1 stop11h 55m

₱5,243

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

sön 1/11

2:00 pm-8:40 am

1 stop18h 40m

₱5,537

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

tis 12/30

3:05 am-6:30 pm

1 stop15h 25m

₱5,655

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

sön 12/28

2:20 am-6:30 pm

1 stop16h 10m

₱6,067

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

fre 1/9

6:40 am-6:30 pm

1 stop11h 50m

₱6,951

Flights are sorted by cheapest round-trip flights first.

Deals found on 12/5

Showing 1-10 of 12 results
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Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

What is the cheapest time of day to fly from CEB to BKI?

Find hourly flight availability from Cebu to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated december 7, 2025.

It’s typically best to fly out from Cebu to Kota Kinabalu in the afternoon. Doing so could potentially save you 15% on the flight price compared to flying at noon, which is usually more expensive.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱28,569, Singapore Airlines can have you in Kota Kinabalu from Cebu in 8h 30m. There are 999 km between Cebu and Kota Kinabalu. Both multi-stop and direct flights can be found to your destination and back.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated december 7, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,377Average₱11,335FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Cebu to Kota Kinabalu. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

Cheapflights simply makes it quick and affordable to book flights from Cebu to Kota Kinabalu by bringing together all flight options from hundreds of airlines and agencies online — and put it in one place for you to choose from. Plus, Cheapflights is 100% free to use for all.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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