Cheap flights from Cebu to Kota Kinabalu from ₱5,385
This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/13. Fares are subject to change and may not be available on all flights or dates of travel.
Find flight deals from Cebu to Kota Kinabalu
Cheapest flights from Cebu to Kota KinabaluExplore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on October 23, 2025.
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on October 23, 2025.
Cheap flight deals from Cebu to Kota Kinabalu
Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated October 23, 2025.
Cheapflights Fare Finder
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.
Fly from
Fly to
Route
Depart
Return
Price
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Wed 11/19
3:30 am-7:10 pm
1 stop15h 40m
Kota Kinabalu
Thu 11/27
9:10 am-9:25 pm
1 stop12h 15m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Sun 1/4
12:55 am-6:30 pm
1 stop17h 35m
Kota Kinabalu
Mon 1/12
6:00 am-9:25 pm
2 stops15h 25m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Mon 1/5
6:35 am-6:30 pm
1 stop11h 55m
Kota Kinabalu
Mon 1/12
6:55 pm-7:30 am
1 stop12h 35m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Thu 11/20
11:35 pm-3:20 pm
2 stops15h 45m
Kota Kinabalu
Thu 11/27
7:20 am-9:00 pm
2 stops13h 40m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Sun 1/4
3:20 am-5:05 pm
2 stops13h 45m
Kota Kinabalu
Mon 1/12
7:20 am-9:00 pm
2 stops13h 40m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Tue 1/13
3:05 am-6:30 pm
1 stop15h 25m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Wed 1/14
5:30 am-6:30 pm
1 stop13h 00m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Sun 1/4
12:55 am-6:30 pm
1 stop17h 35m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Tue 10/28
9:45 pm-6:30 pm
1 stop20h 45m
Cebu CityKota Kinabalu
CEB - BKI
CEBBKI
Cebu City Mactan Intl
Tue 10/28
3:05 am-6:30 pm
1 stop15h 25m
Best time to book a flight from Cebu to Kota Kinabalu
Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Cheapflights Insights
Everything you need to know about your flight from Cebu to Kota Kinabalu
What is the cheapest time of day to fly from CEB to BKI?
Find hourly flight availability from Cebu to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated October 23, 2025.
It’s typically best to fly out from Cebu to Kota Kinabalu in the afternoon. Doing so could potentially save you 15% on the flight price compared to flying at noon, which is usually more expensive.
Related info for your journey
Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
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Alternative routes for Cebu to Kota Kinabalu
See prices for flight routes from nearby airports that may be better suited for you.
Top airline flying from Cebu to Kota Kinabalu
Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated October 23, 2025.
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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?
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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?
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