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Cheap flights from Cebu to Kota Kinabalu from ₱6,341

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 2/17. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Feb 7 — Feb 141
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated January 8, 2026.

Round-trip from

₱9,186

One-way from

₱6,341

Popular in

March

Cheapest in

February

Average price

₱22,460
Philippines AirAsia
  • Philippines AirAsia
  • 3/9-3/13
  • 2 total stops
  • 19h 35m total
  • Cebu to Kota Kinabalu
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Philippines AirAsia
  • Philippines AirAsia
  • 2/17
  • 1 total stop
  • 18h 45m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 14% potential increase in price (₱138,625 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 9% potential price decrease (₱65,650 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in January 2026
Search Deals

Find flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on January 8, 2026.

Mon 3/96:35 amCEB - BKI
1 stop11h 55mPhilippines AirAsia
Fri 3/136:55 pmBKI - CEB
1 stop7h 40mPhilippines AirAsia
Deal found 1/6₱9,186
Fri 2/206:35 amCEB - BKI
1 stop11h 55mPhilippines AirAsia
Fri 2/276:55 pmBKI - CEB
1 stop12h 35mPhilippines AirAsia
Deal found 1/6₱9,482
Mon 3/91:30 pmCEB - BKI
2 stops21h 35mMultiple Airlines
Fri 3/136:55 pmBKI - CEB
1 stop7h 40mMultiple Airlines
Deal found 1/6₱9,778
Fri 2/206:35 amCEB - BKI
1 stop11h 55mMultiple Airlines
Fri 2/276:00 amBKI - CEB
2 stops15h 25mMultiple Airlines
Deal found 1/6₱10,549
Thu 2/511:45 pmCEB - BKI
1 stop18h 45mMultiple Airlines
Thu 2/1911:25 pmBKI - CEB
1 stop12h 30mMultiple Airlines
Deal found 1/6₱11,023
Thu 2/1912:25 amCEB - BKI
2 stops16h 40mPhilippine Airlines
Fri 2/276:00 pmBKI - CEB
2 stops29h 45mPhilippine Airlines
Deal found 1/6₱24,653
Thu 2/511:35 pmCEB - BKI
2 stops15h 45mPhilippine Airlines
Thu 2/196:00 pmBKI - CEB
2 stops29h 00mPhilippine Airlines
Deal found 1/6₱25,720

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated January 8, 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Depart

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 3/9

6:35 am-6:30 pm

1 stop11h 55m

Kota Kinabalu

Fri 3/13

6:55 pm-2:35 am

1 stop7h 40m

₱9,186

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 2/20

6:35 am-6:30 pm

1 stop11h 55m

Kota Kinabalu

Fri 2/27

6:55 pm-7:30 am

1 stop12h 35m

₱9,482

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 3/9

1:30 pm-11:05 am

2 stops21h 35m

Kota Kinabalu

Fri 3/13

6:55 pm-2:35 am

1 stop7h 40m

₱9,778

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 2/20

6:35 am-6:30 pm

1 stop11h 55m

Kota Kinabalu

Fri 2/27

6:00 am-9:25 pm

2 stops15h 25m

₱10,549

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 2/5

11:45 pm-6:30 pm

1 stop18h 45m

Kota Kinabalu

Thu 2/19

11:25 pm-11:55 am

1 stop12h 30m

₱11,023

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 2/19

12:25 am-5:05 pm

2 stops16h 40m

Kota Kinabalu

Fri 2/27

6:00 pm-11:45 pm

2 stops29h 45m

₱24,653

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 2/5

11:35 pm-3:20 pm

2 stops15h 45m

Kota Kinabalu

Thu 2/19

6:00 pm-11:00 pm

2 stops29h 00m

₱25,720

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 6/20

3:25 am-3:35 pm

2 stops12h 10m

Kota Kinabalu

Wed 6/24

5:20 am-12:30 am

2 stops19h 10m

₱28,920

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 2/17

11:45 pm-6:30 pm

1 stop18h 45m

₱6,341

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 2/17

3:05 am-6:30 pm

1 stop15h 25m

₱6,341

Flights are sorted by cheapest round-trip flights first.

Deals found on 1/6

Showing 1-10 of 12 results
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Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱9,186, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 11h 55m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated January 8, 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,428Average₱11,404FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

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