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Cheap flights from Cebu to Kota Kinabalu from ₱4,453

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 2/27. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Oct 13 — Oct 201
1 adult
1 adult, Economy

Cheap flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated September 13, 2025.

Round-trip from

₱9,648

One-way from

₱4,453

Popular in

March

Cheapest in

October

Average price

₱10,390
Philippines AirAsia
  • Philippines AirAsia
  • 11/20-11/24
  • 2 total stops
  • 52h 10m total
  • Cebu to Kota Kinabalu
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2/27
  • 2/27
  • 1 total stop
  • 30h 00m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 22% potential increase in price (₱203,385 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 10% potential price decrease (₱65,263 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in September 2025
Search Deals

Find flight deals from Cebu to Kota Kinabalu

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on September 13, 2025.

Thu 11/205:35 pmCEB - BKI
1 stop24h 55mPhilippines AirAsia
Mon 11/246:55 pmBKI - CEB
1 stop27h 15mPhilippines AirAsia
Deal found 9/11₱9,648
Sun 11/163:30 amCEB - BKI
1 stop30h 00mMultiple Airlines
Fri 11/218:50 pmBKI - CEB
1 stop15h 15mMultiple Airlines
Deal found 9/11₱9,762
Sun 11/163:30 amCEB - BKI
1 stop30h 00mMultiple Airlines
Wed 11/268:50 pmBKI - CEB
1 stop15h 15mMultiple Airlines
Deal found 9/11₱9,876
Fri 11/2110:30 amCEB - BKI
1 stop8h 00mPhilippines AirAsia
Wed 11/266:55 pmBKI - CEB
1 stop7h 40mPhilippines AirAsia
Deal found 9/11₱10,333
Mon 11/178:05 amCEB - BKI
1 stop10h 25mPhilippines AirAsia
Sun 11/236:55 pmBKI - CEB
1 stop6h 50mPhilippines AirAsia
Deal found 9/11₱10,447
Sun 11/163:30 amCEB - BKI
1 stop10h 05mMultiple Airlines
Sun 11/236:55 pmBKI - CEB
1 stop6h 50mMultiple Airlines
Deal found 9/11₱10,561
Fri 11/2110:30 amCEB - BKI
1 stop8h 00mPhilippines AirAsia
Sun 11/236:55 pmBKI - CEB
1 stop6h 50mPhilippines AirAsia
Deal found 9/11₱10,675
Sun 11/163:30 amCEB - BKI
1 stop10h 05mMultiple Airlines
Mon 11/246:55 pmBKI - CEB
1 stop6h 50mMultiple Airlines
Deal found 9/11₱10,732
Fri 11/2110:30 amCEB - BKI
1 stop8h 00mPhilippines AirAsia
Mon 11/246:55 pmBKI - CEB
1 stop6h 50mPhilippines AirAsia
Deal found 9/11₱10,789
Thu 11/2012:55 pmCEB - BKI
1 stop9h 25mMultiple Airlines
Wed 11/266:55 pmBKI - CEB
1 stop7h 40mMultiple Airlines
Deal found 9/11₱10,846
Wed 11/1910:30 amCEB - BKI
1 stop8h 00mPhilippines AirAsia
Sun 11/236:55 pmBKI - CEB
1 stop6h 50mPhilippines AirAsia
Deal found 9/11₱11,075
Wed 11/1910:30 amCEB - BKI
1 stop8h 00mPhilippines AirAsia
Mon 11/246:55 pmBKI - CEB
1 stop6h 50mPhilippines AirAsia
Deal found 9/11₱11,189

Cheapflights Fare Finder

 
Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated September 13, 2025.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Depart

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 11/18

3:30 am-8:10 pm

1 stop16h 40m

Kota Kinabalu

Fri 11/21

8:50 pm-12:05 pm

1 stop15h 15m

₱9,762

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 11/17

8:05 am-6:30 pm

1 stop10h 25m

Kota Kinabalu

Mon 11/24

6:55 pm-1:45 am

1 stop6h 50m

₱10,561

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 11/19

10:30 am-6:30 pm

1 stop8h 00m

Kota Kinabalu

Wed 11/26

6:55 pm-2:35 am

1 stop7h 40m

₱10,732

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 11/21

10:30 am-6:30 pm

1 stop8h 00m

Kota Kinabalu

Mon 11/24

6:55 pm-1:45 am

1 stop6h 50m

₱10,789

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 11/20

12:55 pm-10:20 pm

1 stop9h 25m

Kota Kinabalu

Wed 11/26

6:55 pm-2:35 am

1 stop7h 40m

₱10,846

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 11/19

10:30 am-6:30 pm

1 stop8h 00m

Kota Kinabalu

Sun 11/23

6:55 pm-1:45 am

1 stop6h 50m

₱11,075

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 11/20

12:55 pm-10:20 pm

1 stop9h 25m

Kota Kinabalu

Sun 11/23

6:55 pm-1:45 am

1 stop6h 50m

₱11,246

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 11/22

12:55 pm-9:25 pm

1 stop8h 30m

Kota Kinabalu

Sun 11/23

6:55 pm-1:45 am

1 stop6h 50m

₱11,588

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 11/22

12:55 pm-9:25 pm

1 stop8h 30m

Kota Kinabalu

Mon 11/24

6:55 pm-1:45 am

1 stop6h 50m

₱11,703

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 9/25

1:00 am-1:20 am

1 stop24h 20m

Kota Kinabalu

Sun 9/28

1:45 am-8:00 pm

1 stop18h 15m

₱11,874

Flights are sorted by cheapest round-trip flights first.

Deals found on 9/12

Showing 1-10 of 18 results
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Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

What is the cheapest time of day to fly from CEB to BKI?

Find hourly flight availability from Cebu to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated September 13, 2025.

When flying from Cebu to Kota Kinabalu, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • How long is the flight from Cebu to Kota Kinabalu?

    For as low as ₱10,561, Philippines AirAsia can have you in Kota Kinabalu from Cebu in 10h 25m. There are 999 km between Cebu and Kota Kinabalu.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Cebu to Kota Kinabalu?

    Currently, January is the cheapest month in which you can book a flight from Cebu to Kota Kinabalu (average of ₱83). Flying from Cebu to Kota Kinabalu in December is currently the most expensive (average of ₱112). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated September 13, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱8,118Average₱10,630FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

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How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Of course! You can now track prices for flights from Cebu to Kota Kinabalu and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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