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₱2,413+ Cheap flights to Kota Kinabalu

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/10. Fares are subject to change and may not be available on all flights or dates of travel.
— BKI
Touko 5 — Touko 121
1 adult

Flights to Kota Kinabalu in 2025

Find the latest flights to Kota Kinabalu in 2025, with up-to-date prices and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on huhtikuu 30, 2025.

Round-trip from

₱4,994

One-way from

₱2,413

Popular in

January

Cheapest in

November

Average price

₱6,397

Good round-trip deal

₱5,103 or less

Good one-way deal

₱2,472 or less
Philippines AirAsia
  • Philippines AirAsia
  • 6/12-6/14
  • Nonstop
  • 4h 20m total
  • Manila to Kota Kinabalu
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Philippines AirAsia
  • Philippines AirAsia
  • 7/10
  • Nonstop
  • 2h 10m total
  • Manila to Kota Kinabalu
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Highest demand for flights based on searches. 10% potential increase in price (₱45,589 potential increase over avg. RT price).
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Cheapest flight prices on average. 1% potential price decrease (₱5,198 potential savings vs. average RT price).
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Average for round-trip flights in April 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals to Kota Kinabalu

Cheapest flights to Kota Kinabalu
Explore the most affordable flight options available to Kota Kinabalu. Find the lowest fares based on data from user searches, with prices last updated on huhtikuu 30, 2025.

to 6/1211:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
la 6/141:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 4/28₱4,994
to 7/107:35 pmMNL - BKI
1 stop25h 25mMultiple Airlines
ke 7/231:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 4/29₱7,295
ke 7/96:55 amMNL - BKI
1 stop12h 30mScoot
ke 7/238:25 pmBKI - MNL
1 stop9h 15mScoot
Deal found 4/29₱10,101
su 6/225:45 pmMNL - BKI
1 stop24h 35mChina Southern
ti 7/17:20 pmBKI - MNL
1 stop27h 55mChina Southern
Deal found 4/29₱18,238
ti 7/83:05 pmMNL - BKI
1 stop9h 35mMalaysia Airlines
ti 7/225:20 amBKI - MNL
1 stop8h 45mMalaysia Airlines
Deal found 4/29₱18,406
ke 5/1411:20 pmMNL - BKI
1 stop24h 10mJeju Air
la 5/1712:30 amBKI - MNL
1 stop21h 50mJeju Air
Deal found 4/29₱22,391
to 6/2611:25 amMNL - BKI
1 stop13h 15mPhilippine Airlines
pe 6/275:20 amBKI - MNL
1 stop11h 00mPhilippine Airlines
Deal found 4/29₱22,559
ke 6/183:55 amMNL - BKI
1 stop20h 35mChina Eastern
ti 6/241:30 amBKI - MNL
1 stop23h 50mChina Eastern
Deal found 4/29₱36,140
to 7/106:30 pmMNL - BKI
2 stops17h 25mSingapore Airlines
to 7/2412:40 pmBKI - MNL
2 stops10h 40mSingapore Airlines
Deal found 4/29₱39,226

Cheapflights Fare Finder

Locate flights to Kota Kinabalu that fit your budget, with regularly updated fares and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on huhtikuu 30, 2025.
Use the filters below to find and compare flights to Kota Kinabalu that are best for you.

Fly from

Manila

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

to 6/12

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

la 6/14

1:45 am-3:55 am

Nonstop2h 10m

₱4,994

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

to 7/10

7:35 pm-9:00 pm

1 stop25h 25m

Kota Kinabalu

ke 7/23

1:45 am-3:55 am

Nonstop2h 10m

₱7,295

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

ke 7/9

6:55 am-7:25 pm

1 stop12h 30m

Kota Kinabalu

ke 7/23

8:25 pm-5:40 am

1 stop9h 15m

₱10,101

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

su 6/22

5:45 pm-6:20 pm

1 stop24h 35m

Kota Kinabalu

ma 6/30

7:20 pm-11:15 pm

1 stop27h 55m

₱18,238

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

ti 7/8

3:05 pm-12:40 am

1 stop9h 35m

Kota Kinabalu

ti 7/22

5:20 am-2:05 pm

1 stop8h 45m

₱18,406

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

ke 5/14

11:20 pm-11:30 pm

1 stop24h 10m

Kota Kinabalu

la 5/17

12:30 am-10:20 pm

1 stop21h 50m

₱22,391

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

to 6/26

11:25 am-12:40 am

1 stop13h 15m

Kota Kinabalu

pe 6/27

5:20 am-4:20 pm

1 stop11h 00m

₱22,559

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

ke 6/18

3:55 am-12:30 am

1 stop20h 35m

Kota Kinabalu

ti 6/24

1:30 am-1:20 am

1 stop23h 50m

₱36,140

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

to 7/10

6:30 pm-11:55 am

2 stops17h 25m

Kota Kinabalu

to 7/24

12:40 pm-11:20 pm

2 stops10h 40m

₱39,226

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

to 7/10

11:10 pm-1:20 am

Nonstop2h 10m

₱2,413

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/29

Showing 1-10 of 13 results
1
2

Best time to book a flight to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Kota Kinabalu

When is the best time to book a flight to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on April 25, 2025.

The price you pay for your flight to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 71 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

How long is the flight to Kota Kinabalu?

On average, a flight from Manila to Kota Kinabalu takes 2 hours 10 minutes. Flights to Kota Kinabalu from other popular cities in Philippines will vary in length. Below are a few examples of popular routes and their flight times.

Weekly flight availability to Kota Kinabalu

The most flights from Manila to Kota Kinabalu are scheduled on a Monday (1 on average). You will have fewer flight options on Monday, which is when the least amount of flights are scheduled (1 on average).

What are the most popular airlines that fly to Kota Kinabalu?

The most popular airlines flying from Manila to Kota Kinabalu are Philippines AirAsia, Scoot and Malaysia Airlines.

Philippines AirAsia

Philippines AirAsia

From ₱84

Scoot

Scoot

From ₱165

Malaysia Airlines

Malaysia Airlines

From ₱313

AirAsia

AirAsia

From ₱183

What are the cheapest airlines that fly to Kota Kinabalu?

The cheapest airlines flying from Manila to Kota Kinabalu are Philippines AirAsia, Scoot and AirAsia.

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers hoping to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated huhtikuu 30, 2025.
Singapore Airlines
8.1
Very good
1,292 reviews
Check prices

Boarding

8.2

Comfort

7.9

Crew

8.6

Food

7.7

Entertainment

8.0

Overall

8.1

Reviews

1 / 20
8.0
Excellent

Anonymous,Dec 2024

NRT - LAX

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.
Singapore Airlines
8.1
Very good
1,292 reviews
Singapore Airlines
8.1
Very good
1,292 reviews
Check prices

Boarding

8.2

Comfort

7.9

Crew

8.6

Food

7.7

Entertainment

8.0

Overall

8.1

Reviews

1 / 20
8.0
Excellent

Anonymous,Dec 2024

NRT - LAX

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.
China Southern
7.5
Good
96 reviews
Singapore Airlines
8.1
Very good
1,292 reviews
Check prices

Boarding

8.2

Comfort

7.9

Crew

8.6

Food

7.7

Entertainment

8.0

Overall

8.1

Reviews

1 / 20
8.0
Excellent

Anonymous,Dec 2024

NRT - LAX

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.
Malaysia Airlines
7.3
Good
254 reviews
Singapore Airlines
8.1
Very good
1,292 reviews
Check prices

Boarding

8.2

Comfort

7.9

Crew

8.6

Food

7.7

Entertainment

8.0

Overall

8.1

Reviews

1 / 20
8.0
Excellent

Anonymous,Dec 2024

NRT - LAX

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.
Philippine Airlines
7.2
Good
857 reviews
Singapore Airlines
8.1
Very good
1,292 reviews
Check prices

Boarding

8.2

Comfort

7.9

Crew

8.6

Food

7.7

Entertainment

8.0

Overall

8.1

Reviews

1 / 20
8.0
Excellent

Anonymous,Dec 2024

NRT - LAX

Crew and in flight experience were great! I felt safe in the plane. Only downside was sitting in economy and the seat/person in front of me who had their seat reclined most of the flight (9 hrs) which made it difficult to eat or be fully comfortable.

FAQs about flying to Kota Kinabalu

  • What airport do you fly into for flights to Kota Kinabalu?

    Kota Kinabalu (BKI), located 5.8 km from the city center, is the airport you fly into when you book flights to Kota Kinabalu. Kota Kinabalu is the only Kota Kinabalu airport and it handles 1 daily flight from Manila. 4 airlines have flights from Manila to Kota Kinabalu on a regular basis.

  • Can I find cheaper flights to Kota Kinabalu if I am willing to have layovers?

    Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Kota Kinabalu on Cheapflights that require 1 or 2 stops for potential cost savings.

  • What is the best airline to fly to Kota Kinabalu?

    Based on reviews from Cheapflights users, Philippines AirAsia is rated the highest out of the airlines that fly to Kota Kinabalu.

  • What is the cheapest airport to fly to in Kota Kinabalu?

    Kota Kinabalu is currently the cheapest airport to fly to in Kota Kinabalu. One-way flights to Kota Kinabalu typically cost ₱1,407, while round-trip flights cost around ₱4,199.

  • How much is a round-trip flight to Kota Kinabalu?

    A round-trip flight to Kota Kinabalu will typically cost around ₱101, however they can be found for as little as ₱75.

  • Where does the fastest flight to Kota Kinabalu depart from?

    For those looking to save time traveling to Kota Kinabalu, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 10 minutes).

  • Does Kota Kinabalu have rental cars?

    Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

  • Are there hotels close to Kota Kinabalu?

    Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

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