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₱2,699+ Cheap flights to Kota Kinabalu

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/25. Fares are subject to change and may not be available on all flights or dates of travel.
— BKI
Aug 28 — Sep 41
1 adult

Flights to Kota Kinabalu in 2025

Find the latest flights to Kota Kinabalu in 2025, with up-to-date prices and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on August 23, 2025.

Round-trip from

₱5,286

One-way from

₱2,699

Popular in

January

Cheapest in

July

Average price

₱5,511

Good round-trip deal

₱4,642 or less

Good one-way deal

₱3,056 or less
Philippines AirAsia
  • Philippines AirAsia
  • 10/10-10/12
  • Nonstop
  • 4h 20m total
  • Manila to Kota Kinabalu
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Philippines AirAsia
  • Philippines AirAsia
  • 1/25
  • Nonstop
  • 2h 15m total
  • Manila to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 16% potential increase in price (₱71,108 potential increase over avg. RT price).
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Cheapest flight prices on average. 2% potential price decrease (₱8,068 potential savings vs. average RT price).
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Average for round-trip flights in August 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals to Kota Kinabalu

Cheapest flights to Kota Kinabalu
Explore the most affordable flight options available to Kota Kinabalu. Find the lowest fares based on data from user searches, with prices last updated on August 23, 2025.

Fri 10/1011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/21₱5,286
Mon 10/611:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/21₱5,567
Fri 9/2611:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 9/281:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/23₱6,411
Fri 9/1911:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Thu 9/251:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/22₱7,085
Sun 10/511:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Tue 10/71:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/23₱7,704
Sat 9/2011:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Fri 9/261:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/23₱7,873
Mon 10/66:55 amMNL - BKI
1 stop28h 20mMultiple Airlines
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 8/21₱8,041
Fri 9/266:55 amMNL - BKI
1 stop14h 05mMultiple Airlines
Sun 9/281:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 8/23₱8,829
Mon 9/111:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Thu 9/111:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 8/22₱10,291
Thu 9/2511:10 pmMNL - BKI
Nonstop2h 10mMultiple Airlines
Sun 9/289:20 pmBKI - MNL
1 stop23h 25mMultiple Airlines
Deal found 8/23₱10,853

Cheapflights Fare Finder

 
Locate flights to Kota Kinabalu that fit your budget, with regularly updated fares and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on August 23, 2025.
Use the filters below to find and compare flights to Kota Kinabalu that are best for you.

Fly from

Manila

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 10/10

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sun 10/12

1:45 am-3:55 am

Nonstop2h 10m

₱5,286

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 10/6

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sun 10/12

1:45 am-3:55 am

Nonstop2h 10m

₱5,567

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 9/26

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sun 9/28

1:45 am-3:55 am

Nonstop2h 10m

₱6,411

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 9/19

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Thu 9/25

1:45 am-3:55 am

Nonstop2h 10m

₱7,085

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 10/5

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Tue 10/7

1:45 am-3:55 am

Nonstop2h 10m

₱7,704

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 9/20

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Fri 9/26

1:45 am-3:55 am

Nonstop2h 10m

₱7,873

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 10/6

6:55 am-11:15 am

1 stop28h 20m

Kota Kinabalu

Sun 10/12

1:45 am-3:55 am

Nonstop2h 10m

₱8,041

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 9/26

6:55 am-9:00 pm

1 stop14h 05m

Kota Kinabalu

Sun 9/28

1:45 am-3:55 am

Nonstop2h 10m

₱8,829

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 9/27

7:35 pm-11:15 am

1 stop15h 40m

Kota Kinabalu

Sun 9/28

1:45 am-3:55 am

Nonstop2h 10m

₱8,829

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 9/25

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sun 9/28

9:20 pm-8:45 pm

1 stop23h 25m

₱10,853

Flights are sorted by cheapest round-trip flights first.

Deals found on 8/22

Showing 1-10 of 22 results
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Best time to book a flight to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Kota Kinabalu

When is the best time to book a flight to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on August 22, 2025.

The price you pay for your flight to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 71 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated August 23, 2025.
See what other customers who have flown with Malaysia Airlines, Scoot, and Philippines AirAsia to Malaysia have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Malaysia Airlines
7.4
Good
274 reviews
Check prices

Food

7.0

Crew

8.1

Overall

7.4

Comfort

7.5

Entertainment

6.7

Boarding

7.7

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Malaysia Airlines
7.4
Good
274 reviews
Malaysia Airlines
7.4
Good
274 reviews
Check prices

Food

7.0

Crew

8.1

Overall

7.4

Comfort

7.5

Entertainment

6.7

Boarding

7.7

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Scoot
6.7
Okay
309 reviews
Malaysia Airlines
7.4
Good
274 reviews
Check prices

Food

7.0

Crew

8.1

Overall

7.4

Comfort

7.5

Entertainment

6.7

Boarding

7.7

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Philippines AirAsia
6.6
Okay
113 reviews
Malaysia Airlines
7.4
Good
274 reviews
Check prices

Food

7.0

Crew

8.1

Overall

7.4

Comfort

7.5

Entertainment

6.7

Boarding

7.7

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

FAQs about flying to Kota Kinabalu

  • What airport do you fly into for flights to Kota Kinabalu?

    Kota Kinabalu (BKI), located 5.8 km from the city center, is the airport you fly into when you book flights to Kota Kinabalu.

  • Can I find cheaper flights to Kota Kinabalu if I am willing to have layovers?

    Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Kota Kinabalu on Cheapflights that require 1 or 2 stops for potential cost savings.

  • What is the best airline to fly to Kota Kinabalu?

    Based on reviews from Cheapflights users, Philippines AirAsia is rated the highest out of the airlines that fly to Kota Kinabalu.

  • What is the cheapest airport to fly to in Kota Kinabalu?

    Kota Kinabalu is currently the cheapest airport to fly to in Kota Kinabalu. One-way flights to Kota Kinabalu typically cost ₱1,410, while round-trip flights cost around ₱4,433.

  • How much is a round-trip flight to Kota Kinabalu?

    A round-trip flight to Kota Kinabalu will typically cost around ₱105, however they can be found for as little as ₱79.

  • Where does the fastest flight to Kota Kinabalu depart from?

    For those looking to save time traveling to Kota Kinabalu, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 10 minutes).

  • Does Kota Kinabalu have rental cars?

    Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

  • Are there hotels close to Kota Kinabalu?

    Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

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Flights from Manila to Kota Kinabalu

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Why should you use Cheapflights to find cheap flight tickets to Kota Kinabalu?

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Can Cheapflights find flights to Kota Kinabalu with no change fees?

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Can Cheapflights notify me if prices for flights to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Kota Kinabalu flights so you can book your flight when prices are ideal. Enable price alerts by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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