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₱2,790+ Cheap flights to Kota Kinabalu

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/26. Fares are subject to change and may not be available on all flights or dates of travel.
— BKI
Jun 17 — Jun 241
1 adult

Flights to Kota Kinabalu in 2025

Find the latest flights to Kota Kinabalu in 2025, with up-to-date prices and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on June 12, 2025.

Round-trip from

₱4,185

One-way from

₱2,790

Popular in

January

Cheapest in

June

Average price

₱5,412

Good round-trip deal

₱4,766 or less

Good one-way deal

₱2,183 or less
Philippines AirAsia
  • Philippines AirAsia
  • 7/24-7/26
  • Nonstop
  • 4h 20m total
  • Manila to Kota Kinabalu
Philippines AirAsia
  • Philippines AirAsia
  • 6/26
  • Nonstop
  • 2h 10m total
  • Manila to Kota Kinabalu
Highest demand for flights based on searches. 13% potential increase in price (₱58,601 potential increase over avg. RT price).
Cheapest flight prices on average. 1% potential price decrease (₱5,956 potential savings vs. average RT price).
Average for round-trip flights in June 2025
Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.

Find flight deals to Kota Kinabalu

Cheapest flights to Kota Kinabalu
Explore the most affordable flight options available to Kota Kinabalu. Find the lowest fares based on data from user searches, with prices last updated on June 12, 2025.

Thu 7/2411:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sat 7/261:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 6/11₱4,185
Fri 10/106:55 amMNL - BKI
1 stop14h 05mMultiple Airlines
Tue 10/141:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 6/11₱7,812
Fri 10/106:55 amMNL - BKI
1 stop14h 05mScoot
Wed 10/158:25 pmBKI - MNL
1 stop22h 10mScoot
Deal found 6/11₱10,043
Fri 8/19:35 pmMNL - BKI
1 stop18h 35mRoyal Brunei Airlines
Sun 8/39:20 pmBKI - MNL
1 stop23h 25mRoyal Brunei Airlines
Deal found 6/11₱13,838
Sat 7/265:45 pmMNL - BKI
1 stop8h 45mChina Southern
Sun 7/273:30 amBKI - MNL
1 stop7h 05mChina Southern
Deal found 6/10₱17,185
Wed 10/87:40 amMNL - BKI
1 stop11h 45mSingapore Airlines
Mon 10/138:25 pmBKI - MNL
1 stop19h 20mSingapore Airlines
Deal found 6/10₱17,297
Wed 6/257:20 amMNL - BKI
1 stop14h 15mPhilippine Airlines
Mon 6/3010:20 pmBKI - MNL
1 stop21h 50mPhilippine Airlines
Deal found 6/10₱18,357

Cheapflights Fare Finder

Locate flights to Kota Kinabalu that fit your budget, with regularly updated fares and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on June 12, 2025.
Use the filters below to find and compare flights to Kota Kinabalu that are best for you.

Fly from

Manila

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 7/24

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Sat 7/26

1:45 am-3:55 am

Nonstop2h 10m

₱4,185

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 10/10

6:55 am-9:00 pm

1 stop14h 05m

Kota Kinabalu

Tue 10/14

1:45 am-3:55 am

Nonstop2h 10m

₱7,812

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 10/10

6:55 am-9:00 pm

1 stop14h 05m

Kota Kinabalu

Wed 10/15

8:25 pm-6:35 pm

1 stop22h 10m

₱10,043

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 8/1

9:35 pm-4:10 pm

1 stop18h 35m

Kota Kinabalu

Sun 8/3

9:20 pm-8:45 pm

1 stop23h 25m

₱13,838

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 7/26

5:45 pm-2:30 am

1 stop8h 45m

Kota Kinabalu

Sun 7/27

3:30 am-10:35 am

1 stop7h 05m

₱17,185

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 10/8

7:40 am-7:25 pm

1 stop11h 45m

Kota Kinabalu

Mon 10/13

8:25 pm-3:45 pm

1 stop19h 20m

₱17,297

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 6/25

7:20 am-9:35 pm

1 stop14h 15m

Kota Kinabalu

Mon 6/30

10:20 pm-8:10 pm

1 stop21h 50m

₱18,357

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 6/26

8:35 pm-10:45 pm

Nonstop2h 10m

₱2,790

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 7/21

6:55 am-6:25 pm

1 stop11h 30m

₱4,631

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 7/13

10:45 pm-9:25 am

1 stop10h 40m

₱5,580

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/10

Showing 1-10 of 14 results
1
2

Best time to book a flight to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Kota Kinabalu

When is the best time to book a flight to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on June 9, 2025.

The price you pay for your flight to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 71 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

How long is the flight to Kota Kinabalu?

On average, a flight from Manila to Kota Kinabalu takes 2 hours 10 minutes. Flights to Kota Kinabalu from other popular cities in Philippines will vary in length. Below are a few examples of popular routes and their flight times.

Weekly flight availability to Kota Kinabalu

The most flights from Manila to Kota Kinabalu are scheduled on a Monday (1 on average). You will have fewer flight options on Monday, which is when the least amount of flights are scheduled (1 on average).

What are the cheapest airlines that fly to Kota Kinabalu?

The cheapest airlines flying from Manila to Kota Kinabalu are Philippines AirAsia, Scoot and Malaysia Airlines.

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers hoping to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated June 12, 2025.
Read through reviews of airlines servicing Kota Kinabalu, such as Singapore Airlines, China Southern and Malaysia Airlines. Reviews also offer insight into each airline's entertainment options, comfort, food, crew/service, and boarding process.

Boarding

8.2

Overall

8.1

Food

7.7

Comfort

7.9

Crew

8.6

Entertainment

8.0

Reviews

1 / 20
6.0
Good

Pierre,Apr 2025

MLE - SIN

3 boarding pass checkpoints at the gate. Long line before boarding. Poor leg room in economy.. Flight crew rounds practically non existent during flight.

Boarding

8.2

Overall

8.1

Food

7.7

Comfort

7.9

Crew

8.6

Entertainment

8.0

Reviews

1 / 20
6.0
Good

Pierre,Apr 2025

MLE - SIN

3 boarding pass checkpoints at the gate. Long line before boarding. Poor leg room in economy.. Flight crew rounds practically non existent during flight.

Boarding

8.2

Overall

8.1

Food

7.7

Comfort

7.9

Crew

8.6

Entertainment

8.0

Reviews

1 / 20
6.0
Good

Pierre,Apr 2025

MLE - SIN

3 boarding pass checkpoints at the gate. Long line before boarding. Poor leg room in economy.. Flight crew rounds practically non existent during flight.

Boarding

8.2

Overall

8.1

Food

7.7

Comfort

7.9

Crew

8.6

Entertainment

8.0

Reviews

1 / 20
6.0
Good

Pierre,Apr 2025

MLE - SIN

3 boarding pass checkpoints at the gate. Long line before boarding. Poor leg room in economy.. Flight crew rounds practically non existent during flight.

Boarding

8.2

Overall

8.1

Food

7.7

Comfort

7.9

Crew

8.6

Entertainment

8.0

Reviews

1 / 20
6.0
Good

Pierre,Apr 2025

MLE - SIN

3 boarding pass checkpoints at the gate. Long line before boarding. Poor leg room in economy.. Flight crew rounds practically non existent during flight.

Boarding

8.2

Overall

8.1

Food

7.7

Comfort

7.9

Crew

8.6

Entertainment

8.0

Reviews

1 / 20
6.0
Good

Pierre,Apr 2025

MLE - SIN

3 boarding pass checkpoints at the gate. Long line before boarding. Poor leg room in economy.. Flight crew rounds practically non existent during flight.

FAQs about flying to Kota Kinabalu

  • What airport do you fly into for flights to Kota Kinabalu?

    Kota Kinabalu (BKI), located 5.8 km from the city center, is the airport you fly into when you book flights to Kota Kinabalu. Kota Kinabalu is the only Kota Kinabalu airport and it handles 1 daily flight from Manila. 3 airlines have flights from Manila to Kota Kinabalu on a regular basis.

  • Can I find cheaper flights to Kota Kinabalu if I am willing to have layovers?

    Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Kota Kinabalu on Cheapflights that require 1 or 2 stops for potential cost savings.

  • What is the best airline to fly to Kota Kinabalu?

    Based on reviews from Cheapflights users, Philippines AirAsia is rated the highest out of the airlines that fly to Kota Kinabalu.

  • What is the cheapest airport to fly to in Kota Kinabalu?

    Kota Kinabalu is currently the cheapest airport to fly to in Kota Kinabalu. One-way flights to Kota Kinabalu typically cost ₱1,399, while round-trip flights cost around ₱4,396.

  • How much is a round-trip flight to Kota Kinabalu?

    A round-trip flight to Kota Kinabalu will typically cost around ₱91, however they can be found for as little as ₱79.

  • Where does the fastest flight to Kota Kinabalu depart from?

    For those looking to save time traveling to Kota Kinabalu, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 10 minutes).

  • Does Kota Kinabalu have rental cars?

    Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

  • Are there hotels close to Kota Kinabalu?

    Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

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