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Cheap flights from Manila to Nagasaki from ₱23,524

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/10. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — NGS
Jun 27 — Jul 41
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Manila to Nagasaki

Enter your travel dates to find the best prices.

Cheapest flights from Manila to Nagasaki
Explore the most affordable flight options available from Manila to Nagasaki. Find the lowest fares from popular airlines and budget airlines, with prices last updated on May 28, 2026.

Fri 7/101:10 pm
MNL
-
NGS
1 stop24h 45m
Multiple Airlines
Fri 7/173:35 pm
NGS
-
MNL
1 stop8h 35m
Multiple Airlines
Deal found 5/26₱23,524
Sat 7/1112:10 am
MNL
-
NGS
2 stops13h 45m
Multiple Airlines
Sun 7/193:35 pm
NGS
-
MNL
1 stop9h 00m
Multiple Airlines
Deal found 5/28₱26,227
Wed 6/249:10 pm
MNL
-
NGS
2 stops36h 40m
Multiple Airlines
Wed 7/13:35 pm
NGS
-
MNL
1 stop8h 35m
Multiple Airlines
Deal found 5/27₱28,254
Fri 7/102:40 pm
MNL
-
NGS
2 stops23h 00m
ANA
Fri 7/179:25 am
NGS
-
MNL
2 stops12h 50m
ANA
Deal found 5/26₱30,895
Wed 12/92:50 pm
MNL
-
NGS
1 stop26h 45m
ANA
Fri 12/111:40 pm
NGS
-
MNL
1 stop24h 55m
ANA
Deal found 5/24₱33,966
Wed 12/97:45 pm
MNL
-
NGS
2 stops23h 10m
Multiple Airlines
Fri 12/1110:30 am
NGS
-
MNL
2 stops14h 50m
Multiple Airlines
Deal found 5/24₱39,064

Find flight deals from Manila to Nagasaki

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Nagasaki (NGS). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated May 28, 2026.

Round-trip from

₱23,524
7/10-7/17
  • 7/10-7/17
  • 2 total stops
  • 33h 20m total
  • Manila to Nagasaki
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Manila to Nagasaki that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated May 28, 2026.
Use the filters below to find and compare flights from Manila to Nagasaki that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Fri 7/10

1:10 pm-2:55 pm

1 stop24h 45m

Nagasaki

Fri 7/17

3:35 pm-11:10 pm

1 stop8h 35m

₱23,524
Quickest round-trip

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Sat 7/11

2:50 am-2:55 pm

1 stop11h 05m

Nagasaki

Sun 7/19

3:35 pm-11:35 pm

1 stop9h 00m

₱26,718

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Wed 6/24

9:10 pm-10:50 am

2 stops36h 40m

Nagasaki

Wed 7/1

3:35 pm-11:10 pm

1 stop8h 35m

₱28,254

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Mon 7/27

12:40 am-10:50 am

1 stop9h 10m

Nagasaki

Fri 7/31

11:30 am-11:40 pm

1 stop13h 10m

₱39,923

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Mon 7/6

1:10 am-12:05 pm

1 stop9h 55m

Nagasaki

Thu 7/9

1:20 pm-1:55 am

1 stop13h 35m

₱46,004

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Mon 7/20

7:05 pm-6:40 pm

1 stop22h 35m

Nagasaki

Mon 7/27

10:55 am-6:50 pm

1 stop8h 55m

₱46,434

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Sun 7/19

8:15 am-6:40 pm

1 stop9h 25m

Nagasaki

Tue 7/28

10:55 am-5:40 am

1 stop19h 45m

₱48,522

ManilaNagasaki

MNL - NGS

MNLNGS

Manila Ninoy Aquino Intl

Mon 7/20

7:05 pm-6:40 pm

1 stop22h 35m

Nagasaki

Tue 7/28

10:55 am-5:40 am

1 stop19h 45m

₱48,522

Flights are sorted by cheapest round-trip flights first.

Deals found on 5/26

Sorted by cheapest first

Best time to book a flight from Manila to Nagasaki

Have a flexible travel schedule? Discover the best time to fly to Nagasaki from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Nagasaki

What’s the top layover airport for flights from Manila to Nagasaki?

Share of 1-stop round-trip flights from Manila to Nagasaki chosen by Cheapflights users in the past 12 months, using the same layover each way.

Tokyo (HND) – chosen by Cheapflights users on 90% of 1-stop itineraries from Manila to Nagasaki on Cheapflights.

What’s the cheapest layover airport for flights from Manila to Nagasaki?

Average round-trip fare for 1-stop flights from Manila to Nagasaki, chosen by Cheapflights users in the past 12 months, with the same layover each way.

Tokyo (NRT) is the most affordable 1-stop option, with an average round-trip price of ₱16,621.

What’s the fastest layover option from Manila to Nagasaki?

Shortest average travel time for 1-stop one-way flights from Manila to Nagasaki, based on itineraries clicked by Cheapflights users over the past 12 months, grouped by layover airport.

Flights via Tokyo (NRT) have the shortest average one-way travel time for 1-stop routes: 9h 30m.

Which airport typically offers the quickest layover for flights from Manila to Nagasaki?

Average layover duration for 1-stop one-way flights from Manila to Nagasaki, chosen by Cheapflights users in the last 12 months, grouped by stopover airport.

Flights via Tokyo (NRT) offer the fastest connection on this route, with an average layover time of 4h 23m.

Related info for your journey

Find useful and relevant information for your journey from Manila to Nagasaki. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • Can I find deals for flights from Manila to Nagasaki that include hotel bookings?

    Yes. In addition to deals on Manila to Nagasaki flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Nagasaki?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Nagasaki.

  • Can I find deals for business class flights from Manila to Nagasaki?

    Yes. Cheapflights offers flight deals from Manila to Nagasaki by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Complete your trip

Complete your trip to Nagasaki by adding a car rental and/or hotel reservation to your travel itinerary.
Nagasaki car rentals
Kumamoto Airport car rentals
Saga Airport car rentals

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Manila to Nagasaki?

Cheapflights helps you search for flights from Manila to Nagasaki via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Manila to Nagasaki?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Nagasaki from Manila.

Can Cheapflights find flights from Manila to Nagasaki with no change fees?

Yes, we can. To see specific flights from Manila to Nagasaki with no change fees, users can toggle flexible booking options after using the search form above to find flights.

Can Cheapflights notify me if prices for flights from Manila to Nagasaki become cheaper?

Yes, Cheapflights offers price alerts on Manila to Nagasaki flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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