Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Puerto Princesa to Kyoto as you normally would.
Puerto Princesa (PPS), located 25.0 km from the city center, is the airport you fly out of when you book flights from Puerto Princesa to Kyoto. 0 airlines have flights from Puerto Princesa to Kyoto on a regular basis. Booking flights from Puerto Princesa to Kyoto should not be difficult; the airport handles an average of 0 outbound flights to Kyoto per day.