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Cheap flights from Manila to Japan from ₱5,803

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 11/8. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — FUK
Jul 4 — Jul 111
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Manila to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Manila to Japan
Explore the most affordable flight options available from Manila to Japan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on June 4, 2026.

Sun 7/191:10 pm
MNL
-
KIX
Nonstop4h 10m
Cebu Pacific
Mon 7/209:15 am
KIX
-
MNL
1 stop11h 40m
Cebu Pacific
Deal found 5/30₱13,395
Wed 7/222:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Wed 7/2910:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 5/30₱13,457
Thu 7/302:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Wed 8/510:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 6/3₱13,519
Sun 9/61:10 pm
MNL
-
KIX
Nonstop4h 10m
Cebu Pacific
Sun 9/137:35 pm
KIX
-
MNL
Nonstop4h 30m
Cebu Pacific
Deal found 6/3₱13,580
Sat 7/182:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Sat 7/2510:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 6/3₱13,642
Tue 7/142:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Wed 7/2210:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 5/31₱13,704
Sat 7/182:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Thu 7/3010:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 5/30₱13,827
Sat 7/182:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Tue 7/2810:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 5/30₱13,889
Wed 7/152:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Thu 7/2310:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 6/1₱14,013
Fri 7/172:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Wed 7/2910:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 5/30₱14,074
Thu 7/162:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Fri 7/2410:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 6/3₱14,136
Thu 7/232:50 am
MNL
-
KIX
Nonstop4h 15m
Jetstar Japan
Mon 7/2710:25 pm
KIX
-
MNL
Nonstop4h 25m
Jetstar Japan
Deal found 5/30₱14,198

Find flight deals from Manila to Japan

Keep the following information in mind while searching for Manila to Japan flight deals. Data was last updated June 4, 2026.

Round-trip from

₱13,395

One-way from

₱5,803

Popular in

December

Cheapest in

September

Average price

₱11,914

Good round-trip deal

₱15,169 or less

Good one-way deal

₱8,585 or less
Cebu Pacific
  • Cebu Pacific
  • 7/19-7/20
  • 1 total stop
  • 15h 50m total
  • Manila to Japan
Search Deals
Cebu Pacific
  • Cebu Pacific
  • 11/8
  • Nonstop
  • 3h 55m total
  • Manila to Japan
Search Deals
Highest demand for flights based on searches. 14% potential increase in price (₱147,912 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 4% potential price decrease (₱39,189 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in June 2026
Search Deals
Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Japan.
Search Deals
Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Japan.
Search Deals

Cheapflights Fare Finder

 
Customize your flight search to find flights from Manila to Japan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated June 4, 2026.
Use the filters below to find and compare flights from Manila to Japan that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

ManilaOsaka

MNL - KIX

MNLKIX

Manila Ninoy Aquino Intl

Sat 7/4

2:50 am-8:05 am

Nonstop4h 15m

Osaka Kansai Intl

Thu 7/9

10:25 pm-1:50 am

Nonstop4h 25m

₱16,297

ManilaOsaka

MNL - KIX

MNLKIX

Manila Ninoy Aquino Intl

Fri 7/3

2:50 am-8:05 am

Nonstop4h 15m

Osaka Kansai Intl

Wed 7/8

10:25 pm-1:50 am

Nonstop4h 25m

₱17,037

ManilaOsaka

MNL - KIX

MNLKIX

Manila Ninoy Aquino Intl

Fri 7/3

2:50 am-8:05 am

Nonstop4h 15m

Osaka Kansai Intl

Thu 7/9

10:25 pm-1:50 am

Nonstop4h 25m

₱17,778

ManilaTokyo

MNL - NRT

MNLNRT

Manila Ninoy Aquino Intl

Sat 9/19

12:40 am-6:10 am

Nonstop4h 30m

Tokyo Narita

Wed 9/23

7:40 am-1:50 am

1 stop19h 10m

₱18,148

ManilaTokyo

MNL - NRT

MNLNRT

Manila Ninoy Aquino Intl

Fri 7/10

2:50 am-9:15 pm

1 stop17h 25m

Tokyo Narita

Mon 7/13

7:40 am-1:50 am

1 stop19h 10m

₱19,260

ManilaOsaka

MNL - KIX

MNLKIX

Manila Ninoy Aquino Intl

Sat 10/3

12:40 am-8:50 pm

1 stop19h 10m

Osaka Kansai Intl

Fri 10/9

10:25 pm-1:50 am

Nonstop4h 25m

₱20,000

ManilaTokyo

MNL - NRT

MNLNRT

Manila Ninoy Aquino Intl

Wed 9/9

2:50 pm-8:20 pm

Nonstop4h 30m

Tokyo Narita

Wed 9/23

3:20 pm-11:50 pm

1 stop9h 30m

₱20,494
Quickest round-trip

ManilaFukuoka

MNL - FUK

MNLFUK

Manila Ninoy Aquino Intl

Tue 8/4

9:50 am-2:30 pm

Nonstop3h 40m

Fukuoka

Tue 8/18

3:35 pm-6:20 pm

Nonstop3h 45m

₱20,556

ManilaNagoya

MNL - NGO

MNLNGO

Manila Ninoy Aquino Intl

Mon 9/28

7:00 am-12:10 pm

Nonstop4h 10m

Nagoya Chubu Centrair Intl

Fri 10/2

1:20 pm-4:35 pm

Nonstop4h 15m

₱20,803

ManilaTokyo

MNL - HND

MNLHND

Manila Ninoy Aquino Intl

Sun 9/6

7:05 pm-12:45 am

Nonstop4h 40m

Tokyo Haneda

Sun 9/13

2:05 am-5:40 am

Nonstop4h 35m

₱21,729

Flights are sorted by cheapest round-trip flights first.

Deals found on 6/3

Showing 1-10 of 60 resultsSorted by cheapest first
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Best time to book a flight from Manila to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Japan

What is the cheapest month to book a flight from Manila to Japan?

Currently, September is the cheapest month in which you can book a flight from Manila to Japan (average of ₱12,161). Flying from Manila to Japan in December is currently the most expensive (average of ₱22,778). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to JP?

Find hourly flight availability from Manila to Japan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated June 4, 2026.

A simple way to save on the total cost of your ticket is to fly from Manila to Japan in the morning. If you’re flexible enough to do this you can expect to save up to 28% on your trip compared to booking a flight at noon.

Weekly flight availability from Manila to Japan

Explore weekly flight availability from Manila to Japan. Discover flights operating on different days of the week, giving you the flexibility to choose a travel day that best fits your plans. Compare info to find the most convenient option for your journey. Data last updated June 4, 2026.

The most flights from MNL to JP0 are scheduled on a Monday (3 on average). You will have fewer flight options on Friday, which is when the least amount of flights are scheduled (2 on average).

How often are flights from Manila to Japan delayed?

About 13% of weekly flights between Manila and Japan have experienced delays in the past year, with the average delay time being 131 minutes.

What is the most punctual flight time for Manila to Japan flights?

Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving at night tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Tuesday tends to have the lowest number of delays on this route, whereas Wednesday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Manila to Japan flights?

Over the last year, ANA have had the lowest number of delays on this route, with just 5% of flights being delayed.

How far ahead should I book a flight from Manila to Japan?

The best time to book flights from Manila to Japan is 62 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.

What is the cheapest day to fly from Manila to Japan?

Use this chart to determine the cheapest time to fly round-trip from Manila to Japan. Price data was last updated on May 30, 2026.

Travelers seeking maximum savings on their Manila to Japan flight should consider departing on Saturday afternoons when fares are most often at their lowest. Saturday at noon flights should be avoided if possible as fares are typically the most expensive at this time.

Reviews of airlines servicing Japan

Get insights into the airlines that provide service to Japan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Japan. Reviews last updated June 4, 2026.
Peruse reviews from past customers who have flown with Cathay Pacific,Philippine Airlines, andCebu Pacific from Manila to Japan to help guide your decision. You can also see how each airline stacks up in terms of entertainment options, comfort, food, crew/service, and boarding process.
Cathay Pacific
7.6
Good
1,357 reviews
Check prices

Entertainment

7.8

Boarding

7.9

Food

7.3

Crew

8.1

Comfort

7.6

Overall

7.6

Reviews

1 / 20
4.0
Okay

Tejbir,Apr 2026

YVR - HKG

Flight was late 30 min so was not able to catch next flight. Instead of Delhi they send to Hyderabad and from their to Delhi. It took full 8hours more. Lot of trouble and confusion 😕
Cathay Pacific
7.6
Good
1,357 reviews
Cathay Pacific
7.6
Good
1,357 reviews
Check prices

Entertainment

7.8

Boarding

7.9

Food

7.3

Crew

8.1

Comfort

7.6

Overall

7.6

Reviews

1 / 20
4.0
Okay

Tejbir,Apr 2026

YVR - HKG

Flight was late 30 min so was not able to catch next flight. Instead of Delhi they send to Hyderabad and from their to Delhi. It took full 8hours more. Lot of trouble and confusion 😕
Philippine Airlines
7.3
Good
999 reviews
Cathay Pacific
7.6
Good
1,357 reviews
Check prices

Entertainment

7.8

Boarding

7.9

Food

7.3

Crew

8.1

Comfort

7.6

Overall

7.6

Reviews

1 / 20
4.0
Okay

Tejbir,Apr 2026

YVR - HKG

Flight was late 30 min so was not able to catch next flight. Instead of Delhi they send to Hyderabad and from their to Delhi. It took full 8hours more. Lot of trouble and confusion 😕
Cebu Pacific
6.8
Okay
217 reviews
Cathay Pacific
7.6
Good
1,357 reviews
Check prices

Entertainment

7.8

Boarding

7.9

Food

7.3

Crew

8.1

Comfort

7.6

Overall

7.6

Reviews

1 / 20
4.0
Okay

Tejbir,Apr 2026

YVR - HKG

Flight was late 30 min so was not able to catch next flight. Instead of Delhi they send to Hyderabad and from their to Delhi. It took full 8hours more. Lot of trouble and confusion 😕
Philippines AirAsia
6.8
Okay
126 reviews
Cathay Pacific
7.6
Good
1,357 reviews
Check prices

Entertainment

7.8

Boarding

7.9

Food

7.3

Crew

8.1

Comfort

7.6

Overall

7.6

Reviews

1 / 20
4.0
Okay

Tejbir,Apr 2026

YVR - HKG

Flight was late 30 min so was not able to catch next flight. Instead of Delhi they send to Hyderabad and from their to Delhi. It took full 8hours more. Lot of trouble and confusion 😕

Related info for your journey

Find useful and relevant information for your journey from Manila to Japan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Manila to Japan?

    If you book a flight to Japan from Manila, you will be flying from Ninoy Aquino Intl, which is the city’s only airport. Manila Ninoy Aquino Intl (MNL) is located 10.9 km from the center of Manila.

  • How popular is this Manila to Japan flight route?

    Within the past month, 3,422 users have taken a look at flights from Manila Ninoy Aquino Intl to Japan.

  • How long is the flight from Manila to Japan?

    Departing from Manila to Japan will take you 4h 15m. The distance between Manila and Japan is about 2634 km. When browsing for deals, the options you’ll see will be for both direct flights and flights with stops.

  • What are the most popular routes from Manila to Japan?

    The most popular flight routes from Manila to Japan are Manila Ninoy Aquino Intl - Tokyo Narita, Manila Ninoy Aquino Intl - Tokyo Haneda and Manila Ninoy Aquino Intl - Osaka Kansai Intl.

  • What are the most reliable airlines from Manila to Japan?

    Before booking your flight to Japan from Manila, check out the most reliable airlines to get you to your destination on time: Philippine Airlines (97%), ANA (97%), Cebu Pacific( 95%).

  • What are the cheapest flights from Manila to Japan?

    Looking at all options, your cheapest flight can be booked for ₱5,040. While the most popular route (Manila Ninoy Aquino Intl - Tokyo Narita) can be booked for ₱12,099 on average, our data indicates ₱18,901 when flying from Manila to Japan.

  • Can I find deals for flights from Manila to Japan that include hotel bookings?

    Yes. In addition to deals on Manila to Japan flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Japan.

  • Can I find deals for business class flights from Manila to Japan?

    Yes. Cheapflights offers flight deals from Manila to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Japan?

    Currently, September is the cheapest month in which you can book a flight from Manila to Japan (average of ₱12,161). Flying from Manila to Japan in December is currently the most expensive (average of ₱22,778). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Top 10 airlines flying from Manila to Japan

Discover the top 10 airlines that operate flights from Manila to Japan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated June 4, 2026.
AirlineCheapestAverageFlexibilityOn-time
Jetstar JapanCheapest₱4,968Average₱14,818FlexibilityNo cancel feeOn-timeN/A
Search Jetstar Japan flights
Philippines AirAsiaCheapest₱5,523Average₱12,827FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
Greater Bay AirlinesCheapest₱6,274Average₱14,987FlexibilityNo cancel feeOn-timeN/A
Search Greater Bay Airlines flights
Jetstar AsiaCheapest₱6,786Average₱10,750FlexibilityNo cancel feeOn-time86%
Search Jetstar Asia flights
XiamenAirCheapest₱6,882Average₱17,208FlexibilityNo cancel feeOn-time49%
Search XiamenAir flights
HK ExpressCheapest₱6,972Average₱18,793FlexibilityNo cancel feeOn-time90%
Search HK Express flights
Cebu PacificCheapest₱8,294Average₱17,841FlexibilityNo cancel feeOn-time64%
Search Cebu Pacific flights
Philippine AirlinesCheapest₱8,505Average₱21,648FlexibilityNo cancel feeOn-time60%
Search Philippine Airlines flights
Japan AirlinesCheapest₱9,287Average₱26,905FlexibilityNo cancel feeOn-time79%
Search Japan Airlines flights
ZIPAIRCheapest₱9,956Average₱19,619FlexibilityNo cancel feeOn-timeN/A
Search ZIPAIR flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Manila to Japan?

Cheapflights helps you search for flights from Manila to Japan via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Manila to Japan?

Cheapflights taps into our reliable network of hundreds of airlines and travel agencies to find the best deals for flights from Manila to Japan for you. Better yet — we are completely free to use.

Can Cheapflights find flights from Manila to Japan with no change fees?

Need flexible booking options for your flight to Japan from Manila? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Manila to Japan become cheaper?

Of course! You can now track prices for flights from Manila to Japan and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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