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Cheap flights from Manila to Japan from ₱6,139

MNL — FUK
Oct 31 — Nov 71
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Manila to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Manila to Japan

Mon 12/147:35 am -
Nonstop4h 00m
Thu 1/72:05 pm -
Nonstop4h 50m
Deal found 9/26₱14,470
Tue 12/17:35 am -
Nonstop4h 00m
Sat 12/52:05 pm -
Nonstop4h 50m
Deal found 9/26₱14,533
Sun 11/87:35 am -
Nonstop4h 00m
Wed 11/112:05 pm -
Nonstop4h 50m
Deal found 9/27₱14,846
Mon 12/77:35 am -
Nonstop4h 00m
Fri 12/112:05 pm -
Nonstop4h 50m
Deal found 9/29₱15,097
Wed 12/167:35 am -
Nonstop4h 00m
Sat 1/92:05 pm -
Nonstop4h 50m
Deal found 9/28₱15,535
Fri 11/67:35 am -
Nonstop4h 00m
Mon 11/92:05 pm -
Nonstop4h 50m
Deal found 9/28₱15,661
Fri 11/67:35 am -
Nonstop4h 00m
Thu 11/122:05 pm -
Nonstop4h 50m
Deal found 9/27₱16,099
Tue 12/17:35 am -
Nonstop4h 00m
Mon 12/72:05 pm -
Nonstop4h 50m
Deal found 9/28₱16,224
Mon 11/97:35 am -
Nonstop4h 00m
Sat 11/142:05 pm -
Nonstop4h 50m
Deal found 9/28₱16,287
Thu 12/32:40 am -
Nonstop3h 40m
Sat 12/59:55 pm -
Nonstop4h 45m
Deal found 9/28₱16,350
Sun 11/87:35 am -
Nonstop4h 00m
Sat 11/142:05 pm -
Nonstop4h 50m
Deal found 9/30₱16,350
Sat 10/3112:50 am -
Nonstop4h 20m
Mon 11/912:50 pm -
Nonstop5h 25m
Deal found 9/27₱16,663

Find flight deals from Manila to Japan

Round-trip from

₱14,470

One-way from

₱6,139

Popular in

December

Cheapest in

February

Average price

₱17,978

Good round-trip deal

₱14,313 or less

Good one-way deal

₱7,639 or less
Cebu Pacific
  • Cebu Pacific
  • 12/14-1/7
  • Nonstop
  • 8h 50m total
  • Manila to Japan
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Cebu Pacific
  • Cebu Pacific
  • 12/11-12/31
  • Nonstop
  • 4h 00m total
  • Manila to Japan
Search Deals
Highest demand for flights based on searches. 3% potential increase in price (₱41,158 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease (₱26,496 potential savings vs. average RT price).
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Average for round-trip flights in October 2026
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Japan.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Japan.
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Cheapflights Fare Finder

 
Use the filters below to find and compare flights from Manila to Japan that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

ManilaOsaka

MNL Manila Ninoy Aquino Intl - KIX Osaka Kansai Intl

MNLKIX

Manila Ninoy Aquino Intl

Sun 11/29

2:40 am-7:20 am

Nonstop3h 40m

Osaka Kansai Intl

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱7,392

ManilaFukuoka

MNL Manila Ninoy Aquino Intl - FUK Fukuoka

MNLFUK

Manila Ninoy Aquino Intl

Sun 3/14

2:20 pm-7:00 pm

Nonstop3h 40m

Fukuoka

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱8,707

ManilaSapporo

MNL Manila Ninoy Aquino Intl - CTS Sapporo Chitose

MNLCTS

Manila Ninoy Aquino Intl

Fri 1/22

10:35 am-4:50 pm

Nonstop5h 15m

Sapporo Chitose

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱8,895

ManilaNagoya

MNL Manila Ninoy Aquino Intl - NGO Nagoya Chubu Centrair Intl

MNLNGO

Manila Ninoy Aquino Intl

Fri 12/11

6:15 pm-8:00 am

1 stop12h 45m

Nagoya Chubu Centrair Intl

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱9,021

ManilaTokyo

MNL Manila Ninoy Aquino Intl - NRT Tokyo Narita

MNLNRT

Manila Ninoy Aquino Intl

Sat 11/21

12:50 am-6:10 am

Nonstop4h 20m

Tokyo Narita

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱9,647

ManilaOsaka

MNL Manila Ninoy Aquino Intl - KIX Osaka Kansai Intl

MNLKIX

Manila Ninoy Aquino Intl

Wed 11/11

2:40 am-7:20 am

Nonstop3h 40m

Osaka Kansai Intl

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱9,710

ManilaOkinawa

MNL Manila Ninoy Aquino Intl - OKA Okinawa Naha

MNLOKA

Manila Ninoy Aquino Intl

Sat 11/21

8:40 pm-7:20 pm

1 stop21h 40m

Okinawa Naha

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱10,085

ManilaNagoya

MNL Manila Ninoy Aquino Intl - NGO Nagoya Chubu Centrair Intl

MNLNGO

Manila Ninoy Aquino Intl

Wed 11/25

7:45 am-12:30 pm

Nonstop3h 45m

Nagoya Chubu Centrair Intl

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱10,211

ManilaSapporo

MNL Manila Ninoy Aquino Intl - CTS Sapporo Chitose

MNLCTS

Manila Ninoy Aquino Intl

Thu 11/12

10:35 am-4:50 pm

Nonstop5h 15m

Sapporo Chitose

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱10,273

ManilaSapporo

MNL Manila Ninoy Aquino Intl - CTS Sapporo Chitose

MNLCTS

Manila Ninoy Aquino Intl

Wed 12/16

7:45 am-7:45 pm

1 stop11h 00m

Sapporo Chitose

Wed 12/31

12:00 am-11:00 pm

Nonstop0h 00m

₱10,336

Flights are sorted by cheapest round-trip flights first.

Deals found on 9/27

Showing 1-10 of 60 resultsSorted by cheapest first
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Best time to book a flight from Manila to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Manila with our price prediction graph.
Estimated round-trip price

Cheapflights Insights

Everything you need to know about your flight from Manila to Japan

What is the cheapest month to book a flight from Manila to Japan?

Currently, February is the cheapest month in which you can book a flight from Manila to Japan (average of ₱16,287). Flying from Manila to Japan in December is currently the most expensive (average of ₱22,990). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to JP?

A simple way to save on the total cost of your ticket is to fly from Manila to Japan at noon. If you’re flexible enough to do this you can expect to save up to 29% on your trip compared to booking a flight in the afternoon.

Weekly flight availability from Manila to Japan

The most flights from MNL to JP0 are scheduled on a Monday (3 on average). You will have fewer flight options on Friday, which is when the least amount of flights are scheduled (2 on average).

How often are flights from Manila to Japan delayed?

About 9% of weekly flights between Manila and Japan have experienced delays in the past year, with the average delay time being 131 minutes.

What is the most punctual flight time for Manila to Japan flights?

Historically, flights departing in the evening are less likely to be delayed, whereas flights leaving at night tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Thursday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Manila to Japan flights?

Over the last year, ANA have had the lowest number of delays on this route, with just 5% of flights being delayed.

How far ahead should I book a flight from Manila to Japan?

The best time to book flights from Manila to Japan is 83 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.

What is the cheapest day to fly from Manila to Japan?

Travelers seeking maximum savings on their Manila to Japan flight should consider departing on Friday evenings when fares are most often at their lowest. Wednesday afternoons flights should be avoided if possible as fares are typically the most expensive at this time.

Reviews of airlines servicing Japan

Peruse reviews from past customers who have flown with Cathay Pacific,Philippine Airlines, andCebu Pacific from Manila to Japan to help guide your decision. You can also see how each airline stacks up in terms of entertainment options, comfort, food, crew/service, and boarding process.
Cathay Pacific
7.6
Good
1,506 reviews
Check prices

Comfort

7.6

Food

7.3

Entertainment

7.8

Overall

7.6

Boarding

7.9

Crew

8.1

Reviews

1 / 20
6.0
Good

Anonymous,Jun 2026

MNL - HKG

Cathay Pacific used to be a great airline for travel to Asia. Having travelled with this carrier many times I've noticed a decline the food quality, seat pitch, and entertainment offering. The services still remains top notch as can be said with other carriers in this class (i.e. Emirates, Singapore Airlines, etc.)
Cathay Pacific
7.6
Good
1,506 reviews
Cathay Pacific
7.6
Good
1,506 reviews
Check prices

Comfort

7.6

Food

7.3

Entertainment

7.8

Overall

7.6

Boarding

7.9

Crew

8.1

Reviews

1 / 20
6.0
Good

Anonymous,Jun 2026

MNL - HKG

Cathay Pacific used to be a great airline for travel to Asia. Having travelled with this carrier many times I've noticed a decline the food quality, seat pitch, and entertainment offering. The services still remains top notch as can be said with other carriers in this class (i.e. Emirates, Singapore Airlines, etc.)
Philippine Airlines
7.3
Good
1,026 reviews
Cathay Pacific
7.6
Good
1,506 reviews
Check prices

Comfort

7.6

Food

7.3

Entertainment

7.8

Overall

7.6

Boarding

7.9

Crew

8.1

Reviews

1 / 20
6.0
Good

Anonymous,Jun 2026

MNL - HKG

Cathay Pacific used to be a great airline for travel to Asia. Having travelled with this carrier many times I've noticed a decline the food quality, seat pitch, and entertainment offering. The services still remains top notch as can be said with other carriers in this class (i.e. Emirates, Singapore Airlines, etc.)
Cebu Pacific
6.8
Okay
222 reviews
Cathay Pacific
7.6
Good
1,506 reviews
Check prices

Comfort

7.6

Food

7.3

Entertainment

7.8

Overall

7.6

Boarding

7.9

Crew

8.1

Reviews

1 / 20
6.0
Good

Anonymous,Jun 2026

MNL - HKG

Cathay Pacific used to be a great airline for travel to Asia. Having travelled with this carrier many times I've noticed a decline the food quality, seat pitch, and entertainment offering. The services still remains top notch as can be said with other carriers in this class (i.e. Emirates, Singapore Airlines, etc.)
Philippines AirAsia
6.8
Okay
127 reviews
Cathay Pacific
7.6
Good
1,506 reviews
Check prices

Comfort

7.6

Food

7.3

Entertainment

7.8

Overall

7.6

Boarding

7.9

Crew

8.1

Reviews

1 / 20
6.0
Good

Anonymous,Jun 2026

MNL - HKG

Cathay Pacific used to be a great airline for travel to Asia. Having travelled with this carrier many times I've noticed a decline the food quality, seat pitch, and entertainment offering. The services still remains top notch as can be said with other carriers in this class (i.e. Emirates, Singapore Airlines, etc.)

Related info for your journey

  • What airport do you fly from for flights from Manila to Japan?

    If you book a flight to Japan from Manila, you will be flying from Ninoy Aquino Intl, which is the city’s only airport. Manila Ninoy Aquino Intl (MNL) is located 10.9 km from the center of Manila.

  • How popular is this Manila to Japan flight route?

    Within the past month, 3,084 users have taken a look at flights from Manila Ninoy Aquino Intl to Japan.

  • How long is the flight from Manila to Japan?

    Departing from Manila to Japan will take you 3h 45m. The distance between Manila and Japan is about 2758 km. When browsing for deals, the options you’ll see will be for both direct flights and flights with stops.

  • What are the cheapest airlines to fly from Manila to Japan one-way?

    The cheapest airlines for a one-way flight from Manila to Japan are EVA Air (₱3,014), Cebu Pacific (₱3,028), and Philippines AirAsia (₱4,566).

  • What are the most popular routes from Manila to Japan?

    The most popular flight routes from Manila to Japan are Manila Ninoy Aquino Intl - Tokyo Haneda, Manila Ninoy Aquino Intl - Tokyo Narita and Manila Ninoy Aquino Intl - Osaka Kansai Intl.

  • What are the most reliable airlines from Manila to Japan?

    Before booking your flight to Japan from Manila, check out the most reliable airlines to get you to your destination on time: Philippine Airlines (77%), ANA (77%), Cebu Pacific( 68%).

  • What are the cheapest flights from Manila to Japan?

    Looking at all options, your cheapest flight can be booked for ₱5,412. While the most popular route (Manila Ninoy Aquino Intl - Tokyo Haneda) can be booked for ₱19,169 on average, our data indicates ₱14,635 when flying from Manila to Japan.

  • Can I find deals for flights from Manila to Japan that include hotel bookings?

    Yes. In addition to deals on Manila to Japan flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Japan.

  • Can I find deals for business class flights from Manila to Japan?

    Yes. Cheapflights offers flight deals from Manila to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Japan?

    Currently, February is the cheapest month in which you can book a flight from Manila to Japan (average of ₱16,287). Flying from Manila to Japan in December is currently the most expensive (average of ₱22,990). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Top 10 airlines flying from Manila to Japan

AirlineCheapestAverageFlexibilityOn-time
Jetstar JapanCheapest₱5,603Average₱16,818FlexibilityNo cancel feeOn-timeN/A
Search Jetstar Japan flights
Philippines AirAsiaCheapest₱5,604Average₱13,972FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
XiamenAirCheapest₱6,816Average₱13,376FlexibilityNo cancel feeOn-time49%
Search XiamenAir flights
Cebu PacificCheapest₱8,515Average₱18,737FlexibilityNo cancel feeOn-time64%
Search Cebu Pacific flights
Philippine AirlinesCheapest₱8,631Average₱23,724FlexibilityNo cancel feeOn-time60%
Search Philippine Airlines flights
HK ExpressCheapest₱9,348Average₱21,209FlexibilityNo cancel feeOn-time90%
Search HK Express flights
ZIPAIRCheapest₱9,415Average₱23,189FlexibilityNo cancel feeOn-timeN/A
Search ZIPAIR flights
Greater Bay AirlinesCheapest₱10,421Average₱21,528FlexibilityNo cancel feeOn-timeN/A
Search Greater Bay Airlines flights
Cathay PacificCheapest₱13,976Average₱22,301FlexibilityNo cancel feeOn-time72%
Search Cathay Pacific flights
Japan AirlinesCheapest₱14,836Average₱27,638FlexibilityNo cancel feeOn-time79%
Search Japan Airlines flights

Fly with Cheapflights

How does Cheapflights help users find flights from Manila to Japan?

Cheapflights helps you search for flights from Manila to Japan via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Manila to Japan?

Cheapflights taps into our reliable network of hundreds of airlines and travel agencies to find the best deals for flights from Manila to Japan for you. Better yet — we are completely free to use.

Can Cheapflights find flights from Manila to Japan with no change fees?

Need flexible booking options for your flight to Japan from Manila? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Manila to Japan become cheaper?

Of course! You can now track prices for flights from Manila to Japan and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals above to set up your price alerts.

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