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₱2,950+ Cheap flights to Borneo

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 1/26. Fares are subject to change and may not be available on all flights or dates of travel.
— BKI
Dec 8 — Dec 151
1 adult
1 adult, Economy, 0 bags

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Enter your travel dates to find the best prices.

Cheapest flights to Borneo
Explore the most affordable flight options available to Borneo. Find the lowest fares based on data from user searches, with prices last updated on November 8, 2025.

Wed 11/264:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/5₱6,312
Wed 12/34:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 12/106:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/7₱6,961
Sun 12/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 12/286:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/5₱7,315
Mon 12/224:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Mon 12/296:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/7₱7,433
Fri 11/74:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 11/126:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 11/6₱9,852
Wed 12/34:15 pmMNL - BKI
Nonstop2h 15mMultiple Airlines
Wed 12/1011:25 pmBKI - MNL
2 stops21h 50mMultiple Airlines
Deal found 11/7₱10,796
Thu 11/139:40 pmMNL - BWN
Nonstop2h 05mRoyal Brunei Airlines
Sun 11/1611:55 amBWN - MNL
Nonstop2h 10mRoyal Brunei Airlines
Deal found 11/7₱10,914
Sun 11/164:15 pmMNL - BKI
Nonstop2h 15mMultiple Airlines
Sat 11/221:30 pmBKI - MNL
1 stop11h 05mMultiple Airlines
Deal found 11/6₱11,032
Tue 11/257:30 pmMNL - BKI
1 stop23h 30mMultiple Airlines
Sun 11/306:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/7₱11,681
Fri 12/51:10 amMNL - BKI
1 stop9h 20mMultiple Airlines
Wed 12/106:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 11/7₱12,094
Thu 11/208:00 pmMNL - BWN
Nonstop2h 20mCebu Pacific
Sat 11/2911:05 pmBWN - MNL
Nonstop2h 25mCebu Pacific
Deal found 11/6₱14,158
Sun 12/213:00 pmMNL - BWN
Nonstop2h 05mRoyal Brunei Airlines
Sun 12/2811:55 amBWN - MNL
Nonstop2h 10mRoyal Brunei Airlines
Deal found 11/6₱14,512

Find flights to Borneo

Browse one-way and round-trip flights deals to Borneo on Cheapflights. Flight deals are based on user searches and were last updated on November 8, 2025
Explore Borneo
Flights to Kota Kinabalu
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Flights to Borneo in 2025

Find the latest flights to Borneo in 2025, with up-to-date prices and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on November 8, 2025.

Round-trip from

₱6,194

One-way from

₱2,950

Popular in

January

Cheapest in

July

Average price

₱6,371
Philippines AirAsia
  • Philippines AirAsia
  • 1/21-1/25
  • Nonstop
  • 4h 15m total
  • Manila to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 1/25
  • Nonstop
  • 2h 15m total
  • Manila to Borneo
Search Deals
Highest demand for flights based on searches. 16% potential increase in price (₱1,283 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (₱128 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in November 2025
Search Deals

Cheapflights Fare Finder

 
Locate flights to Borneo that fit your budget, with regularly updated fares and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on November 8, 2025.
Use the filters below to find and compare flights to Borneo that are best for you.

Fly from

Manila

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 1/25

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,194

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 1/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,194

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/26

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 11/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,312

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 12/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 12/28

6:55 pm-8:55 pm

Nonstop2h 00m

₱7,315

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 12/22

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Mon 12/29

6:55 pm-8:55 pm

Nonstop2h 00m

₱7,433

ManilaBandar Seri Begawan

MNL - BWN

MNLBWN

Manila Ninoy Aquino Intl

Sat 1/31

8:00 pm-10:20 pm

Nonstop2h 20m

Bandar Seri Begawan Brunei Intl

Thu 2/5

11:05 pm-1:30 am

Nonstop2h 25m

₱7,787

ManilaBandar Seri Begawan

MNL - BWN

MNLBWN

Manila Ninoy Aquino Intl

Sat 2/14

8:00 pm-10:20 pm

Nonstop2h 20m

Bandar Seri Begawan Brunei Intl

Tue 2/17

11:05 pm-1:30 am

Nonstop2h 25m

₱8,731

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 12/2

1:10 am-9:35 am

1 stop8h 25m

Kota Kinabalu

Wed 12/10

6:55 pm-8:55 pm

Nonstop2h 00m

₱11,386

ManilaKuching

MNL - KCH

MNLKCH

Manila Ninoy Aquino Intl

Sun 3/15

7:30 pm-9:25 pm

1 stop25h 55m

Kuching

Thu 3/26

10:25 pm-6:30 pm

1 stop20h 05m

₱11,504

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 3/11

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Tue 3/17

1:30 am-2:15 pm

1 stop12h 45m

₱11,681

Flights are sorted by cheapest round-trip flights first.

Deals found on 11/7

Showing 1-10 of 60 results
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Best time to book a flight to Borneo

Have a flexible travel schedule? Discover the best time to fly to Borneo with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Borneo

How long is the flight to Borneo?

On average, a flight from Manila to Borneo takes 12 hours 49 minutes. Flights to Borneo from other popular cities in Philippines will vary in length. Below are a few examples of popular routes and their flight times.

When is the cheapest time to fly to Borneo?

Use this chart to determine the cheapest time to fly round-trip from Manila to Borneo. Price data was last updated on February 16, 2025.

Users looking for the lowest fares to Borneo should consider flying on Sunday evenings, when prices are typically cheapest. Budget-minded travelers will want to avoid Thursday at noon, when prices are usually at their highest.

What are the most popular airlines that fly to Borneo?

The most popular airlines flying from Manila to Borneo are Philippines AirAsia, Cebu Pacific and Royal Brunei Airlines.

Philippines AirAsia
Philippines AirAsia
From ₱4,419
Cebu Pacific
Cebu Pacific
From ₱5,585
Royal Brunei Airlines
Royal Brunei Airlines
From ₱10,357
Scoot
Scoot
From ₱7,812

What are the cheapest airlines that fly to Borneo?

The cheapest airlines flying from Manila to Borneo are Philippines AirAsia, Cebu Pacific and Scoot.

Rainfall in Borneo by month

Plan your trip to Borneo by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Borneo ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Borneo when rainfall is around 60.0 mm.

Temperature in Borneo by month

Plan your trip to Borneo by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Borneo, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers hoping to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Borneo

Get insights into the airlines that provide service to Borneo. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Borneo. Reviews last updated November 8, 2025.
Read through reviews of airlines servicing Borneo, such as Malaysia Airlines, Cebu Pacific, and Scoot. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Malaysia Airlines
7.3
Good
279 reviews
Check prices

Food

7.0

Boarding

7.6

Entertainment

6.7

Comfort

7.4

Overall

7.3

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Malaysia Airlines
7.3
Good
279 reviews
Malaysia Airlines
7.3
Good
279 reviews
Check prices

Food

7.0

Boarding

7.6

Entertainment

6.7

Comfort

7.4

Overall

7.3

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Cebu Pacific
6.8
Okay
202 reviews
Malaysia Airlines
7.3
Good
279 reviews
Check prices

Food

7.0

Boarding

7.6

Entertainment

6.7

Comfort

7.4

Overall

7.3

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Scoot
6.7
Okay
309 reviews
Malaysia Airlines
7.3
Good
279 reviews
Check prices

Food

7.0

Boarding

7.6

Entertainment

6.7

Comfort

7.4

Overall

7.3

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Philippines AirAsia
6.6
Okay
114 reviews
Malaysia Airlines
7.3
Good
279 reviews
Check prices

Food

7.0

Boarding

7.6

Entertainment

6.7

Comfort

7.4

Overall

7.3

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

FAQs about flying to Borneo

  • Can I find cheaper flights to Borneo if I am willing to have layovers?

    Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Borneo on Cheapflights that require 1 or 2 stops for potential cost savings.

  • What is the best airline to fly to Borneo?

    Based on reviews from Cheapflights users, Philippines AirAsia is rated the highest out of the airlines that fly to Borneo.

  • How much is a round-trip flight to Borneo?

    A round-trip flight to Borneo will typically cost around ₱6,678, however they can be found for as little as ₱6,027.

  • Where does the fastest flight to Borneo depart from?

    For those looking to save time traveling to Borneo, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 5 minutes).

  • Does Kota Kinabalu have rental cars?

    Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

  • Are there hotels close to Kota Kinabalu?

    Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

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By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Borneo.

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Users can book flights with no change fees policies with our dedicated filters. Book flights to Borneo flexibly with Cheapflights today.

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