Can I find cheaper flights to Borneo if I am willing to have layovers?

Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Borneo on Cheapflights that require 1 or 2 stops for potential cost savings.

What is the best airline to fly to Borneo?

Based on reviews from Cheapflights users, Malaysia Airlines is rated the highest out of the airlines that fly to Borneo.

How much is a round-trip flight to Borneo?

A round-trip flight to Borneo will typically cost around ₱9,456, however they can be found for as little as ₱7,624.

Where does the fastest flight to Borneo depart from?

For those looking to save time traveling to Borneo, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 5 minutes).

Does Kota Kinabalu have rental cars?

Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

Are there hotels close to Kota Kinabalu?

Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

₱4,189+ Cheap Flights to Borneo

Flights to Borneo in 2026

Enter your travel dates to find the best prices.

Cheapest

Best

Direct

Last-minute

One-way

Cheapest flights to Borneo
Explore the most affordable flight options available to Borneo. Find the lowest fares based on data from user searches, with prices last updated on September 3, 2026.

Sun 11/84:15 pm -

Nonstop2h 05m

Fri 11/277:05 pm -

Nonstop2h 10m

Deal found 8/31₱8,752

Mon 10/511:10 pm -

Nonstop2h 10m

Sun 10/181:45 am -

Nonstop2h 10m

Deal found 9/1₱8,815

Fri 9/1811:10 pm -

Nonstop2h 10m

Sun 9/201:45 am -

Nonstop2h 10m

Deal found 8/31₱8,877

Fri 9/1111:10 pm -

Nonstop2h 10m

Sun 9/131:45 am -

Nonstop2h 10m

Deal found 9/2₱8,940

Fri 11/134:15 pm -

Nonstop2h 05m

Wed 11/187:05 pm -

Nonstop2h 10m

Deal found 9/1₱9,002

Fri 10/211:10 pm -

Nonstop2h 10m

Mon 10/51:45 am -

Nonstop2h 10m

Deal found 8/31₱9,065

Fri 9/1811:10 pm -

Nonstop2h 10m

Mon 9/211:45 am -

Nonstop2h 10m

Deal found 9/1₱9,190

Fri 10/2311:10 pm -

Nonstop2h 10m

Sun 10/257:05 pm -

Nonstop2h 10m

Deal found 8/31₱9,252

Fri 9/2511:10 pm -

Nonstop2h 10m

Mon 9/281:45 am -

Nonstop2h 10m

Deal found 9/1₱9,315

Fri 10/304:15 pm -

Nonstop2h 05m

Mon 11/27:05 pm -

Nonstop2h 10m

Deal found 9/2₱9,690

Sun 9/1311:10 pm -

Nonstop2h 10m

Fri 9/181:45 am -

Nonstop2h 10m

Deal found 9/1₱10,003

Tue 11/37:55 pm -

Nonstop2h 25m

Thu 11/511:05 pm -

Nonstop2h 25m

Deal found 8/31₱10,003

Best flights to Borneo
Discover carefully curated flight deals to Borneo that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 3, 2026.

Fri 10/304:15 pm -

Nonstop2h 05m

Mon 11/27:05 pm -

Nonstop2h 10m

Deal found 9/3₱9,690

Sun 10/186:55 am -

1 stop24h 40m

Sun 10/2510:25 pm -

1 stop7h 05m

Deal found 9/3₱10,940

Fri 10/304:15 pm -

Nonstop2h 05m

Mon 11/25:20 am -

1 stop22h 20m

Deal found 9/3₱14,691

Wed 9/303:00 pm -

1 stop5h 30m

Wed 10/79:20 pm -

1 stop23h 35m

Deal found 9/2₱21,318

Wed 9/2311:10 pm -

Nonstop2h 10m

Mon 9/281:45 am -

Nonstop2h 10m

Deal found 9/3₱11,003

Thu 9/1710:45 pm -

1 stop20h 05m

Sun 9/207:15 pm -

1 stop17h 00m

Deal found 9/3₱23,006

Sat 10/241:05 pm -

1 stop25h 35m

Mon 10/2612:05 pm -

1 stop23h 20m

Deal found 8/31₱25,944

Sat 10/1712:15 am -

1 stop17h 15m

Thu 10/2211:00 am -

1 stop16h 40m

Deal found 8/30₱29,445

Tue 9/297:35 am -

1 stop9h 25m

Fri 10/25:20 am -

1 stop11h 10m

Deal found 9/1₱30,071

Tue 10/207:50 pm -

Nonstop2h 20m

Mon 10/266:35 pm -

Nonstop2h 10m

Deal found 8/30₱16,129

Mon 9/149:45 pm -

Nonstop2h 14m

Thu 9/2411:05 pm -

Nonstop2h 25m

Deal found 8/31₱16,692

Wed 10/1411:10 pm -

1 stop10h 00m

Sun 10/251:10 pm -

1 stop8h 05m

Deal found 8/29₱17,692

Sun 10/410:45 pm -

1 stop10h 10m

Sat 10/101:30 pm -

1 stop8h 40m

Deal found 8/30₱23,194

Sun 10/186:55 am -

1 stop14h 35m

Thu 10/2210:15 pm -

1 stop7h 35m

Deal found 8/31₱24,757

Wed 10/78:40 pm -

1 stop19h 30m

Sun 10/1112:35 pm -

1 stop17h 40m

Deal found 8/29₱50,826

Tue 9/222:00 pm -

1 stop24h 55m

Sun 9/273:45 pm -

1 stop25h 40m

Deal found 9/1₱26,007

Fri 10/167:40 pm -

1 stop15h 35m

Fri 10/235:15 pm -

2 stops12h 35m

Deal found 9/1₱20,756

Sun 10/187:35 am -

1 stop9h 55m

Thu 10/226:15 pm -

1 stop22h 15m

Deal found 9/2₱31,884

Wed 11/256:30 am -

1 stop12h 30m

Wed 12/24:50 pm -

2 stops12h 40m

Deal found 8/30₱23,319

Sun 10/187:40 am -

1 stop13h 50m

Thu 10/229:55 am -

2 stops13h 25m

Deal found 8/31₱34,009

Wed 9/303:00 pm -

1 stop5h 30m

Wed 10/711:50 am -

2 stops18h 00m

Deal found 9/2₱25,257

Tue 11/37:00 pm -

1 stop19h 40m

Thu 11/512:05 pm -

1 stop23h 20m

Deal found 8/31₱36,635

Wed 11/42:05 pm -

1 stop21h 10m

Sat 11/712:05 pm -

1 stop24h 45m

Deal found 8/31₱36,635

Sat 9/2610:45 pm -

1 stop20h 05m

Sat 10/312:50 pm -

2 stops17h 00m

Deal found 8/29₱27,757

Tue 1/262:05 pm -

1 stop24h 35m

Fri 1/293:30 pm -

1 stop19h 55m

Deal found 9/2₱36,760

Tue 9/297:50 pm -

1 stop24h 40m

Tue 10/64:55 pm -

2 stops12h 55m

Deal found 9/1₱28,758

Fri 1/292:05 pm -

1 stop21h 10m

Thu 2/412:05 pm -

1 stop27h 45m

Deal found 9/2₱36,760

Wed 1/277:20 am -

1 stop27h 55m

Sat 1/3012:05 pm -

1 stop23h 20m

Deal found 9/2₱36,760

Tue 12/18:00 am -

1 stop16h 35m

Sat 12/55:20 am -

2 stops19h 00m

Deal found 8/30₱32,321

Tue 1/262:05 pm -

1 stop24h 35m

Wed 2/33:30 pm -

1 stop24h 20m

Deal found 9/2₱36,760

Find flights to Borneo

One-wayRound-trip

Explore Borneo

Flights to Kota Kinabalu

Flights to Kuching

Flights to Miri

Find flight deals to Borneo

Round-trip from	₱8,752
One-way from	₱4,189
Popular in	June
Cheapest in	February
Average price	₱8,627

Philippines AirAsia
11/8-11/27
Nonstop
4h 15m total
Manila to Kota Kinabalu

Search Deals

Cebu Pacific
10/13-12/31
Nonstop
2h 20m total
Manila to Borneo

Search Deals

Highest demand for flights based on searches. 11% potential increase in price (₱1,052 potential increase over avg. RT price).

Search Deals

Cheapest flight prices on average. 2% potential price decrease (₱176 potential savings vs. average RT price).

Search Deals

Average for round-trip flights in September 2026

Search Deals

Fly from

Route

Depart

Return

Price

Cheapest round-trip

ManilaKota Kinabalu

MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu

MNLBKI

Manila Ninoy Aquino Intl

Fri 9/25

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱4,251

ManilaKota Kinabalu

MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu

MNLBKI

Manila Ninoy Aquino Intl

Fri 10/16

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱4,564

ManilaBandar Seri Begawan

MNL Manila Ninoy Aquino Intl - BWN Bandar Seri Begawan Brunei Intl

MNLBWN

Manila Ninoy Aquino Intl

Tue 11/3

7:55 pm-10:20 pm

Nonstop2h 25m

Bandar Seri Begawan Brunei Intl

Wed 12/31

12:00 am-12:00 am

Nonstop0h 00m

₱4,751

ManilaKota Kinabalu

MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu

MNLBKI

Manila Ninoy Aquino Intl

Mon 1/11

4:15 pm-6:20 pm

Nonstop2h 05m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱4,876

ManilaKota Kinabalu

MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu

MNLBKI

Manila Ninoy Aquino Intl

Sun 12/13

4:15 pm-6:20 pm

Nonstop2h 05m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱5,877

ManilaTawau

MNL Manila Ninoy Aquino Intl - TWU Tawau

MNLTWU

Manila Ninoy Aquino Intl

Mon 9/14

11:10 pm-7:50 am

1 stop8h 40m

Tawau

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱6,877

ManilaKota Kinabalu

MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu

MNLBKI

Manila Ninoy Aquino Intl

Fri 1/1

4:15 pm-6:20 pm

Nonstop2h 05m

Kota Kinabalu

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱6,877

ManilaKuching

MNL Manila Ninoy Aquino Intl - KCH Kuching

MNLKCH

Manila Ninoy Aquino Intl

Tue 11/3

6:30 am-9:25 pm

1 stop14h 55m

Kuching

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱7,627

Quickest round-trip

ManilaBandar Seri Begawan

MNL Manila Ninoy Aquino Intl - BWN Bandar Seri Begawan Brunei Intl

MNLBWN

Manila Ninoy Aquino Intl

Mon 12/14

9:40 pm-11:45 pm

Nonstop2h 05m

Bandar Seri Begawan Brunei Intl

Wed 12/31

12:00 am-12:00 am

Nonstop0h 00m

₱7,815

ManilaKuching

MNL Manila Ninoy Aquino Intl - KCH Kuching

MNLKCH

Manila Ninoy Aquino Intl

Tue 3/2

6:30 am-9:25 pm

1 stop14h 55m

Kuching

Wed 12/31

12:00 am-12:30 am

Nonstop0h 00m

₱7,940

Flights are sorted by cheapest round-trip flights first.

Deals found on 8/30

Showing 1-10 of 60 resultsSorted by cheapest first

...

Best time to book a flight to Borneo

Have a flexible travel schedule? Discover the best time to fly to Borneo with our price prediction graph.

MNL-BKI

MNL-KCH

MNL-BPN

MNL-BWN

MNL-TWU

Estimated round-trip price

Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Borneo

MNL-zzKVK

MNL-BKI

MNL-KCH

MNL-BPN

MNL-BWN

How long is the flight to Borneo?

On average, a flight from Manila to Borneo takes 13 hours 49 minutes. Flights to Borneo from other popular cities in Philippines will vary in length. Below are a few examples of popular routes and their flight times.

What are the most popular airlines that fly to Borneo?

The most popular airlines flying from Manila to Borneo are Philippines AirAsia, Cebu Pacific and Royal Brunei Airlines.

Royal Brunei Airlines

From ₱11,894

Scoot

From ₱8,530

What are the cheapest airlines that fly to Borneo?

The cheapest airlines flying from Manila to Borneo are Malaysia Airlines, Philippines AirAsia and Cebu Pacific.

Rainfall in Borneo by month

In terms of precipitation, rainfall in Borneo ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Borneo when rainfall is around 60.0 mm.

Temperature in Borneo by month

If weather is an important factor for your trip to Borneo, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers hoping to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

When is the best time to book a flight to Borneo?

To ensure you get the cheapest price possible for a flight to Borneo, you should look to book at least 49 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.

Reviews of airlines servicing Borneo

Read through reviews of airlines servicing Borneo, such as Malaysia Airlines,Cebu Pacific, andPhilippines AirAsia. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.

Malaysia Airlines

7.3

Good

318 reviews

Check prices

Reviews

1 / 20

8.0

Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

Malaysia Airlines

7.3

Good

318 reviews

Malaysia Airlines

7.3

Good

318 reviews

Check prices

Reviews

1 / 20

8.0

Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

Cebu Pacific

6.8

Okay

220 reviews

Malaysia Airlines

7.3

Good

318 reviews

Check prices

Reviews

1 / 20

8.0

Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

Philippines AirAsia

6.8

Okay

126 reviews

Malaysia Airlines

7.3

Good

318 reviews

Check prices

Reviews

1 / 20

8.0

Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

Scoot

6.7

Okay

331 reviews

Malaysia Airlines

7.3

Good

318 reviews

Check prices

Reviews

1 / 20

8.0

Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

FAQs about flying to Borneo

Can I find cheaper flights to Borneo if I am willing to have layovers?
Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Borneo on Cheapflights that require 1 or 2 stops for potential cost savings.
What is the best airline to fly to Borneo?
Based on reviews from Cheapflights users, Malaysia Airlines is rated the highest out of the airlines that fly to Borneo.
How much is a round-trip flight to Borneo?
A round-trip flight to Borneo will typically cost around ₱9,456, however they can be found for as little as ₱7,624.
Where does the fastest flight to Borneo depart from?
For those looking to save time traveling to Borneo, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 5 minutes).
Does Kota Kinabalu have rental cars?
Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.
Are there hotels close to Kota Kinabalu?
Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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How does Cheapflights help users find flights to Borneo?

Deals for Borneo flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose to your preference, such as price, airport, cabin class, and plenty of other options.

Why should you use Cheapflights to find cheap flight tickets to Borneo?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Borneo.

Can Cheapflights find flights to Borneo with no change fees?

Users can book flights with no change fees policies with our dedicated filters. Book flights to Borneo flexibly with Cheapflights today.

Can Cheapflights notify me if prices for flights to Borneo become cheaper?

Of course! You can track prices for flights to Borneo and get an alert from Cheapflights when they change. Have a valid email address ready and click the bell icon next to the flight deals to set up your price alerts.

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₱4,189+ Cheap flights to Borneo

This is the cheapest round-trip flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 10/13. Fares are subject to change and may not be available on all flights or dates of travel.

Flights to Borneo in 2026

Cheapest flights to BorneoExplore the most affordable flight options available to Borneo. Find the lowest fares based on data from user searches, with prices last updated on September 3, 2026.

Explore the most affordable flight options available to Borneo. Find the lowest fares based on data from user searches, with prices last updated on September 3, 2026.

Best flights to BorneoDiscover carefully curated flight deals to Borneo that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 3, 2026.

Discover carefully curated flight deals to Borneo that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 3, 2026.

Direct flights to BorneoExplore non-stop flight options to Borneo based on user searches, and compare prices and availability for your desired travel dates. Data last updated September 3, 2026.

Explore non-stop flight options to Borneo based on user searches, and compare prices and availability for your desired travel dates. Data last updated September 3, 2026.

Last-minute flights to BorneoDiscover last-minute flight deals to Borneo. Data last updated September 3, 2026 and is based on user searches.

Discover last-minute flight deals to Borneo. Data last updated September 3, 2026 and is based on user searches.

One-way flights to BorneoSearch for one-way flight options to Borneo. Find affordable one-way fares based on user searches. Data last updated September 3, 2026.

Search for one-way flight options to Borneo. Find affordable one-way fares based on user searches. Data last updated September 3, 2026.

Find flights to Borneo

Browse one-way and round-trip flights deals to Borneo on Cheapflights. Flight deals are based on user searches and were last updated on September 3, 2026

Explore Borneo

Find flight deals to Borneo

Round-trip from

One-way from

Popular in

Cheapest in

Average price

Cheapflights Fare Finder

Use the filters below to find and compare flights to Borneo that are best for you.

Best time to book a flight to Borneo

Have a flexible travel schedule? Discover the best time to fly to Borneo with our price prediction graph.

Cheapflights Insights

How long is the flight to Borneo?

On average, a flight from Manila to Borneo takes 13 hours 49 minutes. Flights to Borneo from other popular cities in Philippines will vary in length. Below are a few examples of popular routes and their flight times.

What are the most popular airlines that fly to Borneo?

The most popular airlines flying from Manila to Borneo are Philippines AirAsia, Cebu Pacific and Royal Brunei Airlines.

What are the cheapest airlines that fly to Borneo?

The cheapest airlines flying from Manila to Borneo are Malaysia Airlines, Philippines AirAsia and Cebu Pacific.

Rainfall in Borneo by month

Plan your trip to Borneo by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Borneo ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Borneo when rainfall is around 60.0 mm.

Temperature in Borneo by month

Plan your trip to Borneo by taking into account the average temperature totals by month.

When is the best time to book a flight to Borneo?

To ensure you get the cheapest price possible for a flight to Borneo, you should look to book at least 49 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.

Reviews of airlines servicing Borneo

Read through reviews of airlines servicing Borneo, such as Malaysia Airlines,Cebu Pacific, andPhilippines AirAsia. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.

FAQs about flying to Borneo

Can I find cheaper flights to Borneo if I am willing to have layovers?

What is the best airline to fly to Borneo?

How much is a round-trip flight to Borneo?

Where does the fastest flight to Borneo depart from?

Does Kota Kinabalu have rental cars?

Are there hotels close to Kota Kinabalu?

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Search flights to Borneo by cabin class

Find flights to Borneo, based on your preferred cabin class, be it economy, premium economy, business, or first class.

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Check out other popular destinations found by fellow travelers in 2026

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Direct flights to

Book a non-stop flight to one of these other cities located in .

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Make the most of your trip to Borneo by adding car rental and hotel room reservations to your itinerary.

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Fly with Cheapflights

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Can Cheapflights find flights to Borneo with no change fees?

Can Cheapflights notify me if prices for flights to Borneo become cheaper?

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Cheapest flights to Borneo
Explore the most affordable flight options available to Borneo. Find the lowest fares based on data from user searches, with prices last updated on September 3, 2026.

Best flights to Borneo
Discover carefully curated flight deals to Borneo that have cost, travel time, and layovers in mind to ensure you get the best travel experience. Data last updated September 3, 2026.

Direct flights to Borneo
Explore non-stop flight options to Borneo based on user searches, and compare prices and availability for your desired travel dates. Data last updated September 3, 2026.

Last-minute flights to Borneo
Discover last-minute flight deals to Borneo. Data last updated September 3, 2026 and is based on user searches.

One-way flights to Borneo
Search for one-way flight options to Borneo. Find affordable one-way fares based on user searches. Data last updated September 3, 2026.