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₱2,726+ Cheap flights to Borneo

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 3/2. Fares are subject to change and may not be available on all flights or dates of travel.
— BKI
Feb 7 — Feb 141
1 adult
1 adult, Economy, 0 bags

Flights to Borneo in 2026

Find the latest flights to Borneo in 2026, with up-to-date prices and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on January 8, 2026.

Round-trip from

₱6,045

One-way from

₱2,726

Popular in

February

Cheapest in

July

Average price

₱8,593
Philippines AirAsia
  • Philippines AirAsia
  • 1/28-2/11
  • Nonstop
  • 4h 15m total
  • Manila to Kota Kinabalu
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Philippines AirAsia
  • Philippines AirAsia
  • 3/2
  • Nonstop
  • 2h 15m total
  • Manila to Borneo
Search Deals
Highest demand for flights based on searches. 17% potential increase in price (₱1,416 potential increase over avg. RT price).
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Cheapest flight prices on average. 2% potential price decrease (₱173 potential savings vs. average RT price).
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Average for round-trip flights in January 2026
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Find flights to Borneo

Browse one-way and round-trip flights deals to Borneo on Cheapflights. Flight deals are based on user searches and were last updated on January 8, 2026
Explore Borneo
Flights to Kota Kinabalu
Flights to Kuching

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Cheapest flights to Borneo
Explore the most affordable flight options available to Borneo. Find the lowest fares based on data from user searches, with prices last updated on January 8, 2026.

Thu 2/128:00 pmMNL - BWN
Nonstop2h 20mCebu Pacific
Tue 2/1711:05 pmBWN - MNL
Nonstop2h 25mCebu Pacific
Deal found 1/6₱5,985
Wed 1/284:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Wed 2/116:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 1/7₱6,045
Wed 1/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Sun 1/256:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 1/6₱6,222
Wed 4/1511:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Wed 4/221:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 1/6₱6,282
Thu 2/58:00 pmMNL - BWN
Nonstop2h 20mCebu Pacific
Thu 2/1211:05 pmBWN - MNL
Nonstop2h 25mCebu Pacific
Deal found 1/6₱6,282
Sat 2/218:00 pmMNL - BWN
Nonstop2h 20mCebu Pacific
Sat 2/2811:05 pmBWN - MNL
Nonstop2h 25mCebu Pacific
Deal found 1/7₱6,400
Wed 1/214:15 pmMNL - BKI
Nonstop2h 15mPhilippines AirAsia
Fri 1/306:55 pmBKI - MNL
Nonstop2h 00mPhilippines AirAsia
Deal found 1/7₱6,815
Wed 4/156:55 amMNL - BKI
1 stop12h 35mMultiple Airlines
Wed 4/221:45 amBKI - MNL
Nonstop2h 10mMultiple Airlines
Deal found 1/6₱7,882
Sat 2/148:00 pmMNL - BWN
Nonstop2h 20mCebu Pacific
Tue 2/1711:05 pmBWN - MNL
Nonstop2h 25mCebu Pacific
Deal found 1/6₱8,949
Thu 1/297:30 pmMNL - BKI
1 stop23h 30mMultiple Airlines
Sun 2/16:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 1/7₱9,008
Thu 2/51:10 amMNL - BKI
2 stops12h 45mMultiple Airlines
Sun 2/86:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 1/6₱9,897
Sat 2/77:30 pmMNL - BKI
1 stop23h 30mMultiple Airlines
Mon 2/166:55 pmBKI - MNL
Nonstop2h 00mMultiple Airlines
Deal found 1/6₱9,956

Cheapflights Fare Finder

 
Locate flights to Borneo that fit your budget, with regularly updated fares and availability. In the last 7 days, Cheapflights users made a total of 411,093 searches and data was last updated on January 8, 2026.
Use the filters below to find and compare flights to Borneo that are best for you.

Fly from

Manila

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 4/3

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Fri 4/10

1:45 am-3:55 am

Nonstop2h 10m

₱5,985

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/28

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Wed 2/11

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,045

ManilaBandar Seri Begawan

MNL - BWN

MNLBWN

Manila Ninoy Aquino Intl

Thu 2/5

8:00 pm-10:20 pm

Nonstop2h 20m

Bandar Seri Begawan Brunei Intl

Thu 2/12

11:05 pm-1:30 am

Nonstop2h 25m

₱6,282

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 2/22

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sun 3/1

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,282

ManilaBandar Seri Begawan

MNL - BWN

MNLBWN

Manila Ninoy Aquino Intl

Sat 2/21

8:00 pm-10:20 pm

Nonstop2h 20m

Bandar Seri Begawan Brunei Intl

Sat 2/28

11:05 pm-1:30 am

Nonstop2h 25m

₱6,400

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 1/21

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Fri 1/30

6:55 pm-8:55 pm

Nonstop2h 00m

₱6,815

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 4/15

6:55 am-7:30 pm

1 stop12h 35m

Kota Kinabalu

Wed 4/22

1:45 am-3:55 am

Nonstop2h 10m

₱7,882

ManilaBandar Seri Begawan

MNL - BWN

MNLBWN

Manila Ninoy Aquino Intl

Sat 2/14

8:00 pm-10:20 pm

Nonstop2h 20m

Bandar Seri Begawan Brunei Intl

Tue 2/17

11:05 pm-1:30 am

Nonstop2h 25m

₱8,949

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 2/22

4:15 pm-6:30 pm

Nonstop2h 15m

Kota Kinabalu

Sat 2/28

8:00 pm-5:30 am

1 stop9h 30m

₱9,956

ManilaKuching

MNL - KCH

MNLKCH

Manila Ninoy Aquino Intl

Thu 3/12

6:30 am-9:25 pm

1 stop14h 55m

Kuching

Sun 3/15

10:25 pm-5:30 am

1 stop7h 05m

₱10,489

Flights are sorted by cheapest round-trip flights first.

Deals found on 1/7

Showing 1-10 of 46 results
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Best time to book a flight to Borneo

Have a flexible travel schedule? Discover the best time to fly to Borneo with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight to Borneo

How long is the flight to Borneo?

On average, a flight from Manila to Borneo takes 12 hours 46 minutes. Flights to Borneo from other popular cities in Philippines will vary in length. Below are a few examples of popular routes and their flight times.

What are the most popular airlines that fly to Borneo?

The most popular airlines flying from Manila to Borneo are Philippines AirAsia, Cebu Pacific and Royal Brunei Airlines.

Philippines AirAsia
Philippines AirAsia
From ₱4,427
Cebu Pacific
Cebu Pacific
From ₱5,667
Royal Brunei Airlines
Royal Brunei Airlines
From ₱10,180
Scoot
Scoot
From ₱8,173

What are the cheapest airlines that fly to Borneo?

The cheapest airlines flying from Manila to Borneo are Philippines AirAsia, Cebu Pacific and Scoot.

Rainfall in Borneo by month

Plan your trip to Borneo by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Borneo ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Borneo when rainfall is around 60.0 mm.

Temperature in Borneo by month

Plan your trip to Borneo by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Borneo, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers hoping to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Borneo

Get insights into the airlines that provide service to Borneo. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Borneo. Reviews last updated January 8, 2026.
Read through reviews of airlines servicing Borneo, such as Malaysia Airlines, Cebu Pacific, and Scoot. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
Malaysia Airlines
7.3
Good
289 reviews
Check prices

Overall

7.3

Entertainment

6.7

Food

7.0

Boarding

7.6

Comfort

7.5

Crew

8.1

Reviews

1 / 20
6.0
Good

Sandeep,Dec 2025

SYD - KUL

Food was really good. My entertainment screen wasn’t working and the crew couldn’t help despite repeated restarts. I would have appreciated a voucher to use for next time or inflight shopping.
Malaysia Airlines
7.3
Good
289 reviews
Malaysia Airlines
7.3
Good
289 reviews
Check prices

Overall

7.3

Entertainment

6.7

Food

7.0

Boarding

7.6

Comfort

7.5

Crew

8.1

Reviews

1 / 20
6.0
Good

Sandeep,Dec 2025

SYD - KUL

Food was really good. My entertainment screen wasn’t working and the crew couldn’t help despite repeated restarts. I would have appreciated a voucher to use for next time or inflight shopping.
Cebu Pacific
6.8
Okay
205 reviews
Malaysia Airlines
7.3
Good
289 reviews
Check prices

Overall

7.3

Entertainment

6.7

Food

7.0

Boarding

7.6

Comfort

7.5

Crew

8.1

Reviews

1 / 20
6.0
Good

Sandeep,Dec 2025

SYD - KUL

Food was really good. My entertainment screen wasn’t working and the crew couldn’t help despite repeated restarts. I would have appreciated a voucher to use for next time or inflight shopping.
Scoot
6.7
Okay
313 reviews
Malaysia Airlines
7.3
Good
289 reviews
Check prices

Overall

7.3

Entertainment

6.7

Food

7.0

Boarding

7.6

Comfort

7.5

Crew

8.1

Reviews

1 / 20
6.0
Good

Sandeep,Dec 2025

SYD - KUL

Food was really good. My entertainment screen wasn’t working and the crew couldn’t help despite repeated restarts. I would have appreciated a voucher to use for next time or inflight shopping.
Philippines AirAsia
6.6
Okay
118 reviews
Malaysia Airlines
7.3
Good
289 reviews
Check prices

Overall

7.3

Entertainment

6.7

Food

7.0

Boarding

7.6

Comfort

7.5

Crew

8.1

Reviews

1 / 20
6.0
Good

Sandeep,Dec 2025

SYD - KUL

Food was really good. My entertainment screen wasn’t working and the crew couldn’t help despite repeated restarts. I would have appreciated a voucher to use for next time or inflight shopping.

FAQs about flying to Borneo

  • Can I find cheaper flights to Borneo if I am willing to have layovers?

    Yes, flights with layovers are often cheaper than direct flights. Keep an eye out for flight deals to Borneo on Cheapflights that require 1 or 2 stops for potential cost savings.

  • What is the best airline to fly to Borneo?

    Based on reviews from Cheapflights users, Philippines AirAsia is rated the highest out of the airlines that fly to Borneo.

  • How much is a round-trip flight to Borneo?

    A round-trip flight to Borneo will typically cost around ₱7,245, however they can be found for as little as ₱5,616.

  • Where does the fastest flight to Borneo depart from?

    For those looking to save time traveling to Borneo, Manila Ninoy Aquino Intl offers the quickest one-way flight (2 hours 5 minutes).

  • Does Kota Kinabalu have rental cars?

    Yes. Those touching down at Kota Kinabalu can take advantage of the rental car services offered upon their arrival.

  • Are there hotels close to Kota Kinabalu?

    Yes. Kota Kinabalu has hotels nearby for those requiring accommodations. Survivor Lodge Pulau Tiga is the closest property to Kota Kinabalu (0.0 km away from Kota Kinabalu).

See more FAQs

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Why should you use Cheapflights to find cheap flight tickets to Borneo?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Borneo.

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Users can book flights with no change fees policies with our dedicated filters. Book flights to Borneo flexibly with Cheapflights today.

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